Gene : AT1G63080 A. thaliana TAIR10
Defline:  (1 of 12) PTHR24015//PTHR24015:SF884 - FAMILY NOT NAMED // PENTATRICOPEPTIDE (PPR) REPEAT-CONTAINING PROTEIN Genomic Order:  5221
Name:  ? AT1G63080 Secondary Identifier:  ? PAC:19650845
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G63080 0.5kb upstream 0.5kb upstream 3686 true Chr1: 23387631-23391316 Arabidopsis thaliana
AT1G63080 0.5kb upstream 0.5kb upstream 500 false Chr1: 23390817-23391316 Arabidopsis thaliana
AT1G63080 0.5kb downstream 0.5kb downstream 3686 true Chr1: 23387131-23390816 Arabidopsis thaliana
AT1G63080 0.5kb downstream 0.5kb downstream 500 false Chr1: 23387131-23387630 Arabidopsis thaliana
AT1G63080 1.0kb upstream 1.0kb upstream 4186 true Chr1: 23387631-23391816 Arabidopsis thaliana
AT1G63080 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23390817-23391816 Arabidopsis thaliana
AT1G63080 1.0kb downstream 1.0kb downstream 4186 true Chr1: 23386631-23390816 Arabidopsis thaliana
AT1G63080 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23386631-23387630 Arabidopsis thaliana
AT1G63080 2.0kb upstream 2.0kb upstream 5186 true Chr1: 23387631-23392816 Arabidopsis thaliana
AT1G63080 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23390817-23392816 Arabidopsis thaliana
AT1G63080 2.0kb downstream 2.0kb downstream 5186 true Chr1: 23385631-23390816 Arabidopsis thaliana
AT1G63080 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23385631-23387630 Arabidopsis thaliana
AT1G63080 5.0kb upstream 5.0kb upstream 8186 true Chr1: 23387631-23395816 Arabidopsis thaliana
AT1G63080 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23390817-23395816 Arabidopsis thaliana
AT1G63080 5.0kb downstream 5.0kb downstream 8186 true Chr1: 23382631-23390816 Arabidopsis thaliana
AT1G63080 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23382631-23387630 Arabidopsis thaliana
AT1G63080 10.0kb upstream 10.0kb upstream 13186 true Chr1: 23387631-23400816 Arabidopsis thaliana
AT1G63080 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23390817-23400816 Arabidopsis thaliana
AT1G63080 10.0kb downstream 10.0kb downstream 13186 true Chr1: 23377631-23390816 Arabidopsis thaliana
AT1G63080 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23377631-23387630 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377715 5261 Brassicaceae View MSA
123834353 5264 Brassicales-Malvales View MSA
124339820 5266 SBM View MSA
124251579 5268 Malvidae View MSA
124072588 5270 Rosid View MSA
123753756 5271 Pentapetalae View MSA
122797794 5272 Eudicot View MSA
122051419 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.163        
cufflinks 1.294       High
cufflinks 0.959       Low
cufflinks 1.233        
cufflinks 1.038        
cufflinks 1.245        

0 Strain