Gene : LDL1 A. thaliana TAIR10
Primary Identifier:  ? AT1G62830 Defline:  (1 of 1) PTHR10742:SF246 - LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1
Genomic Order:  5190 Name:  ? AT1G62830
Secondary Identifier:  ? PAC:19649189
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Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6441 Arabidopsis thaliana pathologic  

Genomics

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Expression

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5 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G62830 0.5kb upstream 0.5kb upstream 3213 true Chr1: 23264490-23267702 Arabidopsis thaliana
AT1G62830 0.5kb upstream 0.5kb upstream 500 false Chr1: 23267203-23267702 Arabidopsis thaliana
AT1G62830 0.5kb downstream 0.5kb downstream 3213 true Chr1: 23263990-23267202 Arabidopsis thaliana
AT1G62830 0.5kb downstream 0.5kb downstream 500 false Chr1: 23263990-23264489 Arabidopsis thaliana
AT1G62830 1.0kb upstream 1.0kb upstream 3713 true Chr1: 23264490-23268202 Arabidopsis thaliana
AT1G62830 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23267203-23268202 Arabidopsis thaliana
AT1G62830 1.0kb downstream 1.0kb downstream 3713 true Chr1: 23263490-23267202 Arabidopsis thaliana
AT1G62830 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23263490-23264489 Arabidopsis thaliana
AT1G62830 2.0kb upstream 2.0kb upstream 4713 true Chr1: 23264490-23269202 Arabidopsis thaliana
AT1G62830 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23267203-23269202 Arabidopsis thaliana
AT1G62830 2.0kb downstream 2.0kb downstream 4713 true Chr1: 23262490-23267202 Arabidopsis thaliana
AT1G62830 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23262490-23264489 Arabidopsis thaliana
AT1G62830 5.0kb upstream 5.0kb upstream 7713 true Chr1: 23264490-23272202 Arabidopsis thaliana
AT1G62830 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23267203-23272202 Arabidopsis thaliana
AT1G62830 5.0kb downstream 5.0kb downstream 7713 true Chr1: 23259490-23267202 Arabidopsis thaliana
AT1G62830 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23259490-23264489 Arabidopsis thaliana
AT1G62830 10.0kb upstream 10.0kb upstream 12713 true Chr1: 23264490-23277202 Arabidopsis thaliana
AT1G62830 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23267203-23277202 Arabidopsis thaliana
AT1G62830 10.0kb downstream 10.0kb downstream 12713 true Chr1: 23254490-23267202 Arabidopsis thaliana
AT1G62830 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23254490-23264489 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122376165 5261 Brassicaceae View MSA
123829326 5264 Brassicales-Malvales View MSA
124336608 5266 SBM View MSA
124249535 5268 Malvidae View MSA
124062162 5270 Rosid View MSA
123738234 5271 Pentapetalae View MSA
122786001 5272 Eudicot View MSA
122043910 5273 Angiosperm View MSA
121310209 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.631        
cufflinks 6.629        
cufflinks 4.616       Low
cufflinks 7.295        
cufflinks 4.316       Low
cufflinks 7.514       High

0 Strain