Gene : AT1G62350 A. thaliana TAIR10
Defline:  (1 of 367) PF01535 - PPR repeat (PPR) Genomic Order:  5144
Name:  ? AT1G62350 Secondary Identifier:  ? PAC:19655990
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G62350 0.5kb upstream 0.5kb upstream 1962 true Chr1: 23056153-23058114 Arabidopsis thaliana
AT1G62350 0.5kb upstream 0.5kb upstream 500 false Chr1: 23056153-23056652 Arabidopsis thaliana
AT1G62350 0.5kb downstream 0.5kb downstream 1962 true Chr1: 23056653-23058614 Arabidopsis thaliana
AT1G62350 0.5kb downstream 0.5kb downstream 500 false Chr1: 23058115-23058614 Arabidopsis thaliana
AT1G62350 1.0kb upstream 1.0kb upstream 2462 true Chr1: 23055653-23058114 Arabidopsis thaliana
AT1G62350 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23055653-23056652 Arabidopsis thaliana
AT1G62350 1.0kb downstream 1.0kb downstream 2462 true Chr1: 23056653-23059114 Arabidopsis thaliana
AT1G62350 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23058115-23059114 Arabidopsis thaliana
AT1G62350 2.0kb upstream 2.0kb upstream 3462 true Chr1: 23054653-23058114 Arabidopsis thaliana
AT1G62350 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23054653-23056652 Arabidopsis thaliana
AT1G62350 2.0kb downstream 2.0kb downstream 3462 true Chr1: 23056653-23060114 Arabidopsis thaliana
AT1G62350 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23058115-23060114 Arabidopsis thaliana
AT1G62350 5.0kb upstream 5.0kb upstream 6462 true Chr1: 23051653-23058114 Arabidopsis thaliana
AT1G62350 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23051653-23056652 Arabidopsis thaliana
AT1G62350 5.0kb downstream 5.0kb downstream 6462 true Chr1: 23056653-23063114 Arabidopsis thaliana
AT1G62350 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23058115-23063114 Arabidopsis thaliana
AT1G62350 10.0kb upstream 10.0kb upstream 11462 true Chr1: 23046653-23058114 Arabidopsis thaliana
AT1G62350 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23046653-23056652 Arabidopsis thaliana
AT1G62350 10.0kb downstream 10.0kb downstream 11462 true Chr1: 23056653-23068114 Arabidopsis thaliana
AT1G62350 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23058115-23068114 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379472 5261 Brassicaceae View MSA
123829559 5264 Brassicales-Malvales View MSA
124336773 5266 SBM View MSA
124247997 5268 Malvidae View MSA
124066909 5270 Rosid View MSA
123752097 5271 Pentapetalae View MSA
122797918 5272 Eudicot View MSA
122044559 5273 Angiosperm View MSA
121348230 5274 Embryophyte View MSA
123380783 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.886        
cufflinks 1.671        
cufflinks 1.366        
cufflinks 2.086        
cufflinks 1.135       Low
cufflinks 1.97        

0 Strain