Gene : AT1G61410 A. thaliana TAIR10
Defline:  (1 of 2) PF06632 - DNA double-strand break repair and V(D)J recombination protein XRCC4 (XRCC4) Genomic Order:  5044
Name:  ? AT1G61410 Secondary Identifier:  ? PAC:19653105
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G61410 0.5kb upstream 0.5kb upstream 1410 true Chr1: 22658552-22659961 Arabidopsis thaliana
AT1G61410 0.5kb upstream 0.5kb upstream 500 false Chr1: 22659462-22659961 Arabidopsis thaliana
AT1G61410 0.5kb downstream 0.5kb downstream 1410 true Chr1: 22658052-22659461 Arabidopsis thaliana
AT1G61410 0.5kb downstream 0.5kb downstream 500 false Chr1: 22658052-22658551 Arabidopsis thaliana
AT1G61410 1.0kb upstream 1.0kb upstream 1910 true Chr1: 22658552-22660461 Arabidopsis thaliana
AT1G61410 1.0kb upstream 1.0kb upstream 1000 false Chr1: 22659462-22660461 Arabidopsis thaliana
AT1G61410 1.0kb downstream 1.0kb downstream 1910 true Chr1: 22657552-22659461 Arabidopsis thaliana
AT1G61410 1.0kb downstream 1.0kb downstream 1000 false Chr1: 22657552-22658551 Arabidopsis thaliana
AT1G61410 2.0kb upstream 2.0kb upstream 2910 true Chr1: 22658552-22661461 Arabidopsis thaliana
AT1G61410 2.0kb upstream 2.0kb upstream 2000 false Chr1: 22659462-22661461 Arabidopsis thaliana
AT1G61410 2.0kb downstream 2.0kb downstream 2910 true Chr1: 22656552-22659461 Arabidopsis thaliana
AT1G61410 2.0kb downstream 2.0kb downstream 2000 false Chr1: 22656552-22658551 Arabidopsis thaliana
AT1G61410 5.0kb upstream 5.0kb upstream 5910 true Chr1: 22658552-22664461 Arabidopsis thaliana
AT1G61410 5.0kb upstream 5.0kb upstream 5000 false Chr1: 22659462-22664461 Arabidopsis thaliana
AT1G61410 5.0kb downstream 5.0kb downstream 5910 true Chr1: 22653552-22659461 Arabidopsis thaliana
AT1G61410 5.0kb downstream 5.0kb downstream 5000 false Chr1: 22653552-22658551 Arabidopsis thaliana
AT1G61410 10.0kb upstream 10.0kb upstream 10910 true Chr1: 22658552-22669461 Arabidopsis thaliana
AT1G61410 10.0kb upstream 10.0kb upstream 10000 false Chr1: 22659462-22669461 Arabidopsis thaliana
AT1G61410 10.0kb downstream 10.0kb downstream 10910 true Chr1: 22648552-22659461 Arabidopsis thaliana
AT1G61410 10.0kb downstream 10.0kb downstream 10000 false Chr1: 22648552-22658551 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121657132 5273 Angiosperm View MSA
122328641 5261 Brassicaceae Singleton cluster - no MSA
123769984 5264 Brassicales-Malvales Singleton cluster - no MSA
124268534 5266 SBM Singleton cluster - no MSA
124124731 5268 Malvidae Singleton cluster - no MSA
124038392 5270 Rosid View MSA
123610784 5271 Pentapetalae View MSA
122645376 5272 Eudicot View MSA
120929179 5274 Embryophyte View MSA
122969751 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.123        
cufflinks 3.69        
cufflinks 2.07       Low
cufflinks 3.267        
cufflinks 1.838       Low
cufflinks 3.647        

0 Strain