Gene : AT1G61100 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31008//PTHR31008:SF6 - COP1-INTERACTING PROTEIN-RELATED // CSL1 Genomic Order:  5009
Name:  ? AT1G61100 Secondary Identifier:  ? PAC:19655009
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G61100 0.5kb upstream 0.5kb upstream 4296 true Chr1: 22508538-22512833 Arabidopsis thaliana
AT1G61100 0.5kb upstream 0.5kb upstream 500 false Chr1: 22512334-22512833 Arabidopsis thaliana
AT1G61100 0.5kb downstream 0.5kb downstream 4296 true Chr1: 22508038-22512333 Arabidopsis thaliana
AT1G61100 0.5kb downstream 0.5kb downstream 500 false Chr1: 22508038-22508537 Arabidopsis thaliana
AT1G61100 1.0kb upstream 1.0kb upstream 4796 true Chr1: 22508538-22513333 Arabidopsis thaliana
AT1G61100 1.0kb upstream 1.0kb upstream 1000 false Chr1: 22512334-22513333 Arabidopsis thaliana
AT1G61100 1.0kb downstream 1.0kb downstream 4796 true Chr1: 22507538-22512333 Arabidopsis thaliana
AT1G61100 1.0kb downstream 1.0kb downstream 1000 false Chr1: 22507538-22508537 Arabidopsis thaliana
AT1G61100 2.0kb upstream 2.0kb upstream 5796 true Chr1: 22508538-22514333 Arabidopsis thaliana
AT1G61100 2.0kb upstream 2.0kb upstream 2000 false Chr1: 22512334-22514333 Arabidopsis thaliana
AT1G61100 2.0kb downstream 2.0kb downstream 5796 true Chr1: 22506538-22512333 Arabidopsis thaliana
AT1G61100 2.0kb downstream 2.0kb downstream 2000 false Chr1: 22506538-22508537 Arabidopsis thaliana
AT1G61100 5.0kb upstream 5.0kb upstream 8796 true Chr1: 22508538-22517333 Arabidopsis thaliana
AT1G61100 5.0kb upstream 5.0kb upstream 5000 false Chr1: 22512334-22517333 Arabidopsis thaliana
AT1G61100 5.0kb downstream 5.0kb downstream 8796 true Chr1: 22503538-22512333 Arabidopsis thaliana
AT1G61100 5.0kb downstream 5.0kb downstream 5000 false Chr1: 22503538-22508537 Arabidopsis thaliana
AT1G61100 10.0kb upstream 10.0kb upstream 13796 true Chr1: 22508538-22522333 Arabidopsis thaliana
AT1G61100 10.0kb upstream 10.0kb upstream 10000 false Chr1: 22512334-22522333 Arabidopsis thaliana
AT1G61100 10.0kb downstream 10.0kb downstream 13796 true Chr1: 22498538-22512333 Arabidopsis thaliana
AT1G61100 10.0kb downstream 10.0kb downstream 10000 false Chr1: 22498538-22508537 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366410 5261 Brassicaceae View MSA
123839158 5264 Brassicales-Malvales View MSA
124340209 5266 SBM View MSA
124240119 5268 Malvidae View MSA
124066704 5270 Rosid View MSA
123751203 5271 Pentapetalae View MSA
122797098 5272 Eudicot View MSA
122048758 5273 Angiosperm View MSA
121350762 5274 Embryophyte View MSA
123381879 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 37.484     High High
cufflinks 15.873       Low
cufflinks 20.969        
cufflinks 18.023        
cufflinks 24.977        
cufflinks 23.067        

0 Strain