Gene : AT1G63490 A. thaliana TAIR10
Defline:  (1 of 1) PTHR10694//PTHR10694:SF8 - JUMONJI DOMAIN CONTAINING PROTEIN // LYSINE-SPECIFIC DEMETHYLASE LID Genomic Order:  5267
Name:  ? AT1G63490 Secondary Identifier:  ? PAC:19653542
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G63490 0.5kb upstream 0.5kb upstream 7875 true Chr1: 23544656-23552530 Arabidopsis thaliana
AT1G63490 0.5kb upstream 0.5kb upstream 500 false Chr1: 23552031-23552530 Arabidopsis thaliana
AT1G63490 0.5kb downstream 0.5kb downstream 7875 true Chr1: 23544156-23552030 Arabidopsis thaliana
AT1G63490 0.5kb downstream 0.5kb downstream 500 false Chr1: 23544156-23544655 Arabidopsis thaliana
AT1G63490 1.0kb upstream 1.0kb upstream 8375 true Chr1: 23544656-23553030 Arabidopsis thaliana
AT1G63490 1.0kb upstream 1.0kb upstream 1000 false Chr1: 23552031-23553030 Arabidopsis thaliana
AT1G63490 1.0kb downstream 1.0kb downstream 8375 true Chr1: 23543656-23552030 Arabidopsis thaliana
AT1G63490 1.0kb downstream 1.0kb downstream 1000 false Chr1: 23543656-23544655 Arabidopsis thaliana
AT1G63490 2.0kb upstream 2.0kb upstream 9375 true Chr1: 23544656-23554030 Arabidopsis thaliana
AT1G63490 2.0kb upstream 2.0kb upstream 2000 false Chr1: 23552031-23554030 Arabidopsis thaliana
AT1G63490 2.0kb downstream 2.0kb downstream 9375 true Chr1: 23542656-23552030 Arabidopsis thaliana
AT1G63490 2.0kb downstream 2.0kb downstream 2000 false Chr1: 23542656-23544655 Arabidopsis thaliana
AT1G63490 5.0kb upstream 5.0kb upstream 12375 true Chr1: 23544656-23557030 Arabidopsis thaliana
AT1G63490 5.0kb upstream 5.0kb upstream 5000 false Chr1: 23552031-23557030 Arabidopsis thaliana
AT1G63490 5.0kb downstream 5.0kb downstream 12375 true Chr1: 23539656-23552030 Arabidopsis thaliana
AT1G63490 5.0kb downstream 5.0kb downstream 5000 false Chr1: 23539656-23544655 Arabidopsis thaliana
AT1G63490 10.0kb upstream 10.0kb upstream 17375 true Chr1: 23544656-23562030 Arabidopsis thaliana
AT1G63490 10.0kb upstream 10.0kb upstream 10000 false Chr1: 23552031-23562030 Arabidopsis thaliana
AT1G63490 10.0kb downstream 10.0kb downstream 17375 true Chr1: 23534656-23552030 Arabidopsis thaliana
AT1G63490 10.0kb downstream 10.0kb downstream 10000 false Chr1: 23534656-23544655 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328678 5261 Brassicaceae Singleton cluster - no MSA
123770019 5264 Brassicales-Malvales Singleton cluster - no MSA
124268569 5266 SBM Singleton cluster - no MSA
124248029 5268 Malvidae View MSA
124062119 5270 Rosid View MSA
123738333 5271 Pentapetalae View MSA
122792222 5272 Eudicot View MSA
122044842 5273 Angiosperm View MSA
121344507 5274 Embryophyte View MSA
123426516 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.775        
cufflinks 6.135        
cufflinks 3.487        
cufflinks 6.421       High
cufflinks 3.462       Low
cufflinks 5.967        

0 Strain