Gene : AT1G60830 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23139//PTHR23139:SF62 - RNA-BINDING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  4974
Name:  ? AT1G60830 Secondary Identifier:  ? PAC:19653125
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G60830 0.5kb upstream 0.5kb upstream 1046 true Chr1: 22395058-22396103 Arabidopsis thaliana
AT1G60830 0.5kb upstream 0.5kb upstream 500 false Chr1: 22395604-22396103 Arabidopsis thaliana
AT1G60830 0.5kb downstream 0.5kb downstream 1046 true Chr1: 22394558-22395603 Arabidopsis thaliana
AT1G60830 0.5kb downstream 0.5kb downstream 500 false Chr1: 22394558-22395057 Arabidopsis thaliana
AT1G60830 1.0kb upstream 1.0kb upstream 1546 true Chr1: 22395058-22396603 Arabidopsis thaliana
AT1G60830 1.0kb upstream 1.0kb upstream 1000 false Chr1: 22395604-22396603 Arabidopsis thaliana
AT1G60830 1.0kb downstream 1.0kb downstream 1546 true Chr1: 22394058-22395603 Arabidopsis thaliana
AT1G60830 1.0kb downstream 1.0kb downstream 1000 false Chr1: 22394058-22395057 Arabidopsis thaliana
AT1G60830 2.0kb upstream 2.0kb upstream 2546 true Chr1: 22395058-22397603 Arabidopsis thaliana
AT1G60830 2.0kb upstream 2.0kb upstream 2000 false Chr1: 22395604-22397603 Arabidopsis thaliana
AT1G60830 2.0kb downstream 2.0kb downstream 2546 true Chr1: 22393058-22395603 Arabidopsis thaliana
AT1G60830 2.0kb downstream 2.0kb downstream 2000 false Chr1: 22393058-22395057 Arabidopsis thaliana
AT1G60830 5.0kb upstream 5.0kb upstream 5546 true Chr1: 22395058-22400603 Arabidopsis thaliana
AT1G60830 5.0kb upstream 5.0kb upstream 5000 false Chr1: 22395604-22400603 Arabidopsis thaliana
AT1G60830 5.0kb downstream 5.0kb downstream 5546 true Chr1: 22390058-22395603 Arabidopsis thaliana
AT1G60830 5.0kb downstream 5.0kb downstream 5000 false Chr1: 22390058-22395057 Arabidopsis thaliana
AT1G60830 10.0kb upstream 10.0kb upstream 10546 true Chr1: 22395058-22405603 Arabidopsis thaliana
AT1G60830 10.0kb upstream 10.0kb upstream 10000 false Chr1: 22395604-22405603 Arabidopsis thaliana
AT1G60830 10.0kb downstream 10.0kb downstream 10546 true Chr1: 22385058-22395603 Arabidopsis thaliana
AT1G60830 10.0kb downstream 10.0kb downstream 10000 false Chr1: 22385058-22395057 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379311 5261 Brassicaceae View MSA
123802203 5264 Brassicales-Malvales View MSA
124299417 5266 SBM View MSA
124150835 5268 Malvidae View MSA
124072862 5270 Rosid View MSA
123753064 5271 Pentapetalae View MSA
122797129 5272 Eudicot View MSA
122050030 5273 Angiosperm View MSA
123429142 5275 Viridiplantae View MSA
121349493 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.093       High
cufflinks 0.42        
cufflinks 0.27       Low
cufflinks 0.426        
cufflinks 0.437        
cufflinks 0.32     Low  

0 Strain