Gene : ECHID A. thaliana TAIR10
Primary Identifier:  ? AT1G60550 Defline:  (1 of 1) 4.1.3.36 - 1,4-dihydroxy-2-naphthoyl-CoA synthase / o-succinylbenzoyl-CoA 1,4-dihydroxy-2-naphthoate-lyase (cyclizing)
Genomic Order:  4945 Name:  ? AT1G60550
Secondary Identifier:  ? PAC:19655739
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5837 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G60550 0.5kb upstream 0.5kb upstream 2899 true Chr1: 22305831-22308729 Arabidopsis thaliana
AT1G60550 0.5kb upstream 0.5kb upstream 500 false Chr1: 22308230-22308729 Arabidopsis thaliana
AT1G60550 0.5kb downstream 0.5kb downstream 2899 true Chr1: 22305331-22308229 Arabidopsis thaliana
AT1G60550 0.5kb downstream 0.5kb downstream 500 false Chr1: 22305331-22305830 Arabidopsis thaliana
AT1G60550 1.0kb upstream 1.0kb upstream 3399 true Chr1: 22305831-22309229 Arabidopsis thaliana
AT1G60550 1.0kb upstream 1.0kb upstream 1000 false Chr1: 22308230-22309229 Arabidopsis thaliana
AT1G60550 1.0kb downstream 1.0kb downstream 3399 true Chr1: 22304831-22308229 Arabidopsis thaliana
AT1G60550 1.0kb downstream 1.0kb downstream 1000 false Chr1: 22304831-22305830 Arabidopsis thaliana
AT1G60550 2.0kb upstream 2.0kb upstream 4399 true Chr1: 22305831-22310229 Arabidopsis thaliana
AT1G60550 2.0kb upstream 2.0kb upstream 2000 false Chr1: 22308230-22310229 Arabidopsis thaliana
AT1G60550 2.0kb downstream 2.0kb downstream 4399 true Chr1: 22303831-22308229 Arabidopsis thaliana
AT1G60550 2.0kb downstream 2.0kb downstream 2000 false Chr1: 22303831-22305830 Arabidopsis thaliana
AT1G60550 5.0kb upstream 5.0kb upstream 7399 true Chr1: 22305831-22313229 Arabidopsis thaliana
AT1G60550 5.0kb upstream 5.0kb upstream 5000 false Chr1: 22308230-22313229 Arabidopsis thaliana
AT1G60550 5.0kb downstream 5.0kb downstream 7399 true Chr1: 22300831-22308229 Arabidopsis thaliana
AT1G60550 5.0kb downstream 5.0kb downstream 5000 false Chr1: 22300831-22305830 Arabidopsis thaliana
AT1G60550 10.0kb upstream 10.0kb upstream 12399 true Chr1: 22305831-22318229 Arabidopsis thaliana
AT1G60550 10.0kb upstream 10.0kb upstream 10000 false Chr1: 22308230-22318229 Arabidopsis thaliana
AT1G60550 10.0kb downstream 10.0kb downstream 12399 true Chr1: 22295831-22308229 Arabidopsis thaliana
AT1G60550 10.0kb downstream 10.0kb downstream 10000 false Chr1: 22295831-22305830 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365259 5261 Brassicaceae View MSA
123830601 5264 Brassicales-Malvales View MSA
124337572 5266 SBM View MSA
124237230 5268 Malvidae View MSA
124066910 5270 Rosid View MSA
123738598 5271 Pentapetalae View MSA
122786230 5272 Eudicot View MSA
122043180 5273 Angiosperm View MSA
121346128 5274 Embryophyte View MSA
123423771 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.874        
cufflinks 1.993        
cufflinks 26.324     High  
cufflinks 2.059        
cufflinks 20.104        
cufflinks 1.599       Low

0 Strain