Gene : AT1G72960 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11649//PTHR11649:SF64 - MSS1/TRME-RELATED GTP-BINDING PROTEIN // PROTEIN ROOT HAIR DEFECTIVE 3 HOMOLOG 1 Genomic Order:  6254
Name:  ? AT1G72960 Secondary Identifier:  ? PAC:19653203
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G72960 0.5kb upstream 0.5kb upstream 5127 true Chr1: 27445736-27450862 Arabidopsis thaliana
AT1G72960 0.5kb upstream 0.5kb upstream 500 false Chr1: 27445736-27446235 Arabidopsis thaliana
AT1G72960 0.5kb downstream 0.5kb downstream 5127 true Chr1: 27446236-27451362 Arabidopsis thaliana
AT1G72960 0.5kb downstream 0.5kb downstream 500 false Chr1: 27450863-27451362 Arabidopsis thaliana
AT1G72960 1.0kb upstream 1.0kb upstream 5627 true Chr1: 27445236-27450862 Arabidopsis thaliana
AT1G72960 1.0kb upstream 1.0kb upstream 1000 false Chr1: 27445236-27446235 Arabidopsis thaliana
AT1G72960 1.0kb downstream 1.0kb downstream 5627 true Chr1: 27446236-27451862 Arabidopsis thaliana
AT1G72960 1.0kb downstream 1.0kb downstream 1000 false Chr1: 27450863-27451862 Arabidopsis thaliana
AT1G72960 2.0kb upstream 2.0kb upstream 6627 true Chr1: 27444236-27450862 Arabidopsis thaliana
AT1G72960 2.0kb upstream 2.0kb upstream 2000 false Chr1: 27444236-27446235 Arabidopsis thaliana
AT1G72960 2.0kb downstream 2.0kb downstream 6627 true Chr1: 27446236-27452862 Arabidopsis thaliana
AT1G72960 2.0kb downstream 2.0kb downstream 2000 false Chr1: 27450863-27452862 Arabidopsis thaliana
AT1G72960 5.0kb upstream 5.0kb upstream 9627 true Chr1: 27441236-27450862 Arabidopsis thaliana
AT1G72960 5.0kb upstream 5.0kb upstream 5000 false Chr1: 27441236-27446235 Arabidopsis thaliana
AT1G72960 5.0kb downstream 5.0kb downstream 9627 true Chr1: 27446236-27455862 Arabidopsis thaliana
AT1G72960 5.0kb downstream 5.0kb downstream 5000 false Chr1: 27450863-27455862 Arabidopsis thaliana
AT1G72960 10.0kb upstream 10.0kb upstream 14627 true Chr1: 27436236-27450862 Arabidopsis thaliana
AT1G72960 10.0kb upstream 10.0kb upstream 10000 false Chr1: 27436236-27446235 Arabidopsis thaliana
AT1G72960 10.0kb downstream 10.0kb downstream 14627 true Chr1: 27446236-27460862 Arabidopsis thaliana
AT1G72960 10.0kb downstream 10.0kb downstream 10000 false Chr1: 27450863-27460862 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372108 5261 Brassicaceae View MSA
123800298 5264 Brassicales-Malvales View MSA
124297728 5266 SBM View MSA
124253658 5268 Malvidae View MSA
124066568 5270 Rosid View MSA
123749417 5271 Pentapetalae View MSA
122789407 5272 Eudicot View MSA
122048345 5273 Angiosperm View MSA
121345089 5274 Embryophyte View MSA
123427050 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.114     Low  
cufflinks 0.252     Low  
cufflinks 0.029     Low Low
cufflinks 0.21     Low  
cufflinks 0.034     Low Low
cufflinks 0.331     Low High

0 Strain