Gene : CM3 A. thaliana TAIR10
Primary Identifier:  ? AT1G69370 Defline:  (1 of 3) 5.4.99.5 - Chorismate mutase / Hydroxyphenylpyruvate synthase
Genomic Order:  5891 Name:  ? AT1G69370
Secondary Identifier:  ? PAC:19649480
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3461 Arabidopsis thaliana pathologic  
Athaliana PWY-3462 Arabidopsis thaliana pathologic  
Athaliana PWY-3481 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G69370 0.5kb upstream 0.5kb upstream 2272 true Chr1: 26079456-26081727 Arabidopsis thaliana
AT1G69370 0.5kb upstream 0.5kb upstream 500 false Chr1: 26079456-26079955 Arabidopsis thaliana
AT1G69370 0.5kb downstream 0.5kb downstream 2272 true Chr1: 26079956-26082227 Arabidopsis thaliana
AT1G69370 0.5kb downstream 0.5kb downstream 500 false Chr1: 26081728-26082227 Arabidopsis thaliana
AT1G69370 1.0kb upstream 1.0kb upstream 2772 true Chr1: 26078956-26081727 Arabidopsis thaliana
AT1G69370 1.0kb upstream 1.0kb upstream 1000 false Chr1: 26078956-26079955 Arabidopsis thaliana
AT1G69370 1.0kb downstream 1.0kb downstream 2772 true Chr1: 26079956-26082727 Arabidopsis thaliana
AT1G69370 1.0kb downstream 1.0kb downstream 1000 false Chr1: 26081728-26082727 Arabidopsis thaliana
AT1G69370 2.0kb upstream 2.0kb upstream 3772 true Chr1: 26077956-26081727 Arabidopsis thaliana
AT1G69370 2.0kb upstream 2.0kb upstream 2000 false Chr1: 26077956-26079955 Arabidopsis thaliana
AT1G69370 2.0kb downstream 2.0kb downstream 3772 true Chr1: 26079956-26083727 Arabidopsis thaliana
AT1G69370 2.0kb downstream 2.0kb downstream 2000 false Chr1: 26081728-26083727 Arabidopsis thaliana
AT1G69370 5.0kb upstream 5.0kb upstream 6772 true Chr1: 26074956-26081727 Arabidopsis thaliana
AT1G69370 5.0kb upstream 5.0kb upstream 5000 false Chr1: 26074956-26079955 Arabidopsis thaliana
AT1G69370 5.0kb downstream 5.0kb downstream 6772 true Chr1: 26079956-26086727 Arabidopsis thaliana
AT1G69370 5.0kb downstream 5.0kb downstream 5000 false Chr1: 26081728-26086727 Arabidopsis thaliana
AT1G69370 10.0kb upstream 10.0kb upstream 11772 true Chr1: 26069956-26081727 Arabidopsis thaliana
AT1G69370 10.0kb upstream 10.0kb upstream 10000 false Chr1: 26069956-26079955 Arabidopsis thaliana
AT1G69370 10.0kb downstream 10.0kb downstream 11772 true Chr1: 26079956-26091727 Arabidopsis thaliana
AT1G69370 10.0kb downstream 10.0kb downstream 10000 false Chr1: 26081728-26091727 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041201 5273 Angiosperm View MSA
122377151 5261 Brassicaceae View MSA
123835152 5264 Brassicales-Malvales View MSA
124322009 5266 SBM View MSA
124252605 5268 Malvidae View MSA
124071158 5270 Rosid View MSA
123736644 5271 Pentapetalae View MSA
122792454 5272 Eudicot View MSA
121347234 5274 Embryophyte View MSA
123427559 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.994       Low
cufflinks 12.506        
cufflinks 17.733       High
cufflinks 13.346        
cufflinks 16.434        
cufflinks 9.762        

0 Strain