Gene : AT1G68200 A. thaliana TAIR10
Defline:  (1 of 2) PTHR12547//PTHR12547:SF60 - CCCH ZINC FINGER/TIS11-RELATED // ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 14-RELATED Genomic Order:  5767
Name:  ? AT1G68200 Secondary Identifier:  ? PAC:19649512
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G68200 0.5kb upstream 0.5kb upstream 2331 true Chr1: 25561618-25563948 Arabidopsis thaliana
AT1G68200 0.5kb upstream 0.5kb upstream 500 false Chr1: 25561618-25562117 Arabidopsis thaliana
AT1G68200 0.5kb downstream 0.5kb downstream 2331 true Chr1: 25562118-25564448 Arabidopsis thaliana
AT1G68200 0.5kb downstream 0.5kb downstream 500 false Chr1: 25563949-25564448 Arabidopsis thaliana
AT1G68200 1.0kb upstream 1.0kb upstream 2831 true Chr1: 25561118-25563948 Arabidopsis thaliana
AT1G68200 1.0kb upstream 1.0kb upstream 1000 false Chr1: 25561118-25562117 Arabidopsis thaliana
AT1G68200 1.0kb downstream 1.0kb downstream 2831 true Chr1: 25562118-25564948 Arabidopsis thaliana
AT1G68200 1.0kb downstream 1.0kb downstream 1000 false Chr1: 25563949-25564948 Arabidopsis thaliana
AT1G68200 2.0kb upstream 2.0kb upstream 3831 true Chr1: 25560118-25563948 Arabidopsis thaliana
AT1G68200 2.0kb upstream 2.0kb upstream 2000 false Chr1: 25560118-25562117 Arabidopsis thaliana
AT1G68200 2.0kb downstream 2.0kb downstream 3831 true Chr1: 25562118-25565948 Arabidopsis thaliana
AT1G68200 2.0kb downstream 2.0kb downstream 2000 false Chr1: 25563949-25565948 Arabidopsis thaliana
AT1G68200 5.0kb upstream 5.0kb upstream 6831 true Chr1: 25557118-25563948 Arabidopsis thaliana
AT1G68200 5.0kb upstream 5.0kb upstream 5000 false Chr1: 25557118-25562117 Arabidopsis thaliana
AT1G68200 5.0kb downstream 5.0kb downstream 6831 true Chr1: 25562118-25568948 Arabidopsis thaliana
AT1G68200 5.0kb downstream 5.0kb downstream 5000 false Chr1: 25563949-25568948 Arabidopsis thaliana
AT1G68200 10.0kb upstream 10.0kb upstream 11831 true Chr1: 25552118-25563948 Arabidopsis thaliana
AT1G68200 10.0kb upstream 10.0kb upstream 10000 false Chr1: 25552118-25562117 Arabidopsis thaliana
AT1G68200 10.0kb downstream 10.0kb downstream 11831 true Chr1: 25562118-25573948 Arabidopsis thaliana
AT1G68200 10.0kb downstream 10.0kb downstream 10000 false Chr1: 25563949-25573948 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369889 5261 Brassicaceae View MSA
123835441 5264 Brassicales-Malvales View MSA
124338168 5266 SBM View MSA
124237270 5268 Malvidae View MSA
124071931 5270 Rosid View MSA
123741558 5271 Pentapetalae View MSA
122789151 5272 Eudicot View MSA
122047448 5273 Angiosperm View MSA
121350535 5274 Embryophyte View MSA
123428726 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.266     Low  
cufflinks 0.825        
cufflinks 0.093     Low Low
cufflinks 1.159        
cufflinks 0.12     Low Low
cufflinks 1.532       High

0 Strain