Gene : AT1G67560 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11771//PTHR11771:SF60 - LIPOXYGENASE // LIPOXYGENASE 6, CHLOROPLASTIC Genomic Order:  5695
Name:  ? AT1G67560 Secondary Identifier:  ? PAC:19653355
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Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-5409 Arabidopsis thaliana pathologic  
Athaliana PWY-5410 Arabidopsis thaliana pathologic  
Athaliana PWY-735 Arabidopsis thaliana pathologic  

Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G67560 0.5kb upstream 0.5kb upstream 4866 true Chr1: 25319399-25324264 Arabidopsis thaliana
AT1G67560 0.5kb upstream 0.5kb upstream 500 false Chr1: 25319399-25319898 Arabidopsis thaliana
AT1G67560 0.5kb downstream 0.5kb downstream 4866 true Chr1: 25319899-25324764 Arabidopsis thaliana
AT1G67560 0.5kb downstream 0.5kb downstream 500 false Chr1: 25324265-25324764 Arabidopsis thaliana
AT1G67560 1.0kb upstream 1.0kb upstream 5366 true Chr1: 25318899-25324264 Arabidopsis thaliana
AT1G67560 1.0kb upstream 1.0kb upstream 1000 false Chr1: 25318899-25319898 Arabidopsis thaliana
AT1G67560 1.0kb downstream 1.0kb downstream 5366 true Chr1: 25319899-25325264 Arabidopsis thaliana
AT1G67560 1.0kb downstream 1.0kb downstream 1000 false Chr1: 25324265-25325264 Arabidopsis thaliana
AT1G67560 2.0kb upstream 2.0kb upstream 6366 true Chr1: 25317899-25324264 Arabidopsis thaliana
AT1G67560 2.0kb upstream 2.0kb upstream 2000 false Chr1: 25317899-25319898 Arabidopsis thaliana
AT1G67560 2.0kb downstream 2.0kb downstream 6366 true Chr1: 25319899-25326264 Arabidopsis thaliana
AT1G67560 2.0kb downstream 2.0kb downstream 2000 false Chr1: 25324265-25326264 Arabidopsis thaliana
AT1G67560 5.0kb upstream 5.0kb upstream 9366 true Chr1: 25314899-25324264 Arabidopsis thaliana
AT1G67560 5.0kb upstream 5.0kb upstream 5000 false Chr1: 25314899-25319898 Arabidopsis thaliana
AT1G67560 5.0kb downstream 5.0kb downstream 9366 true Chr1: 25319899-25329264 Arabidopsis thaliana
AT1G67560 5.0kb downstream 5.0kb downstream 5000 false Chr1: 25324265-25329264 Arabidopsis thaliana
AT1G67560 10.0kb upstream 10.0kb upstream 14366 true Chr1: 25309899-25324264 Arabidopsis thaliana
AT1G67560 10.0kb upstream 10.0kb upstream 10000 false Chr1: 25309899-25319898 Arabidopsis thaliana
AT1G67560 10.0kb downstream 10.0kb downstream 14366 true Chr1: 25319899-25334264 Arabidopsis thaliana
AT1G67560 10.0kb downstream 10.0kb downstream 10000 false Chr1: 25324265-25334264 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365902 5261 Brassicaceae View MSA
123839661 5264 Brassicales-Malvales View MSA
124340250 5266 SBM View MSA
124236928 5268 Malvidae View MSA
124068489 5270 Rosid View MSA
123750087 5271 Pentapetalae View MSA
122788853 5272 Eudicot View MSA
122051623 5273 Angiosperm View MSA
123429188 5275 Viridiplantae View MSA
121351701 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.604        
cufflinks 29.725     High High
cufflinks 10.644       Low
cufflinks 20.427        
cufflinks 11.328       Low
cufflinks 22.841        

0 Strain