Gene : AT1G66780 A. thaliana TAIR10
Defline:  (1 of 14) PTHR11206:SF87 - MATE EFFLUX FAMILY PROTEIN-RELATED Genomic Order:  5614
Name:  ? AT1G66780 Secondary Identifier:  ? PAC:19656833
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G66780 0.5kb upstream 0.5kb upstream 2773 true Chr1: 24908713-24911485 Arabidopsis thaliana
AT1G66780 0.5kb upstream 0.5kb upstream 500 false Chr1: 24908713-24909212 Arabidopsis thaliana
AT1G66780 0.5kb downstream 0.5kb downstream 2773 true Chr1: 24909213-24911985 Arabidopsis thaliana
AT1G66780 0.5kb downstream 0.5kb downstream 500 false Chr1: 24911486-24911985 Arabidopsis thaliana
AT1G66780 1.0kb upstream 1.0kb upstream 3273 true Chr1: 24908213-24911485 Arabidopsis thaliana
AT1G66780 1.0kb upstream 1.0kb upstream 1000 false Chr1: 24908213-24909212 Arabidopsis thaliana
AT1G66780 1.0kb downstream 1.0kb downstream 3273 true Chr1: 24909213-24912485 Arabidopsis thaliana
AT1G66780 1.0kb downstream 1.0kb downstream 1000 false Chr1: 24911486-24912485 Arabidopsis thaliana
AT1G66780 2.0kb upstream 2.0kb upstream 4273 true Chr1: 24907213-24911485 Arabidopsis thaliana
AT1G66780 2.0kb upstream 2.0kb upstream 2000 false Chr1: 24907213-24909212 Arabidopsis thaliana
AT1G66780 2.0kb downstream 2.0kb downstream 4273 true Chr1: 24909213-24913485 Arabidopsis thaliana
AT1G66780 2.0kb downstream 2.0kb downstream 2000 false Chr1: 24911486-24913485 Arabidopsis thaliana
AT1G66780 5.0kb upstream 5.0kb upstream 7273 true Chr1: 24904213-24911485 Arabidopsis thaliana
AT1G66780 5.0kb upstream 5.0kb upstream 5000 false Chr1: 24904213-24909212 Arabidopsis thaliana
AT1G66780 5.0kb downstream 5.0kb downstream 7273 true Chr1: 24909213-24916485 Arabidopsis thaliana
AT1G66780 5.0kb downstream 5.0kb downstream 5000 false Chr1: 24911486-24916485 Arabidopsis thaliana
AT1G66780 10.0kb upstream 10.0kb upstream 12273 true Chr1: 24899213-24911485 Arabidopsis thaliana
AT1G66780 10.0kb upstream 10.0kb upstream 10000 false Chr1: 24899213-24909212 Arabidopsis thaliana
AT1G66780 10.0kb downstream 10.0kb downstream 12273 true Chr1: 24909213-24921485 Arabidopsis thaliana
AT1G66780 10.0kb downstream 10.0kb downstream 10000 false Chr1: 24911486-24921485 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362258 5261 Brassicaceae View MSA
123832848 5264 Brassicales-Malvales View MSA
124346775 5266 SBM View MSA
124254486 5268 Malvidae View MSA
124070136 5270 Rosid View MSA
123747121 5271 Pentapetalae View MSA
122794225 5272 Eudicot View MSA
122042479 5273 Angiosperm View MSA
121350842 5274 Embryophyte View MSA
123428088 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.012     Low Low
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.022     Low  
cufflinks 0.0     Not Expressed Not Expressed
cufflinks 0.021     Low  
cufflinks 0.035     Low High

0 Strain