Gene : PAO4 A. thaliana TAIR10
Primary Identifier:  ? AT1G65840 Defline:  (1 of 1) PTHR10742:SF228 - POLYAMINE OXIDASE 4-RELATED
Genomic Order:  5513 Name:  ? AT1G65840
Secondary Identifier:  ? PAC:19656807
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1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-6441 Arabidopsis thaliana pathologic  

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G65840 0.5kb upstream 0.5kb upstream 3745 true Chr1: 24489280-24493024 Arabidopsis thaliana
AT1G65840 0.5kb upstream 0.5kb upstream 500 false Chr1: 24489280-24489779 Arabidopsis thaliana
AT1G65840 0.5kb downstream 0.5kb downstream 3745 true Chr1: 24489780-24493524 Arabidopsis thaliana
AT1G65840 0.5kb downstream 0.5kb downstream 500 false Chr1: 24493025-24493524 Arabidopsis thaliana
AT1G65840 1.0kb upstream 1.0kb upstream 4245 true Chr1: 24488780-24493024 Arabidopsis thaliana
AT1G65840 1.0kb upstream 1.0kb upstream 1000 false Chr1: 24488780-24489779 Arabidopsis thaliana
AT1G65840 1.0kb downstream 1.0kb downstream 4245 true Chr1: 24489780-24494024 Arabidopsis thaliana
AT1G65840 1.0kb downstream 1.0kb downstream 1000 false Chr1: 24493025-24494024 Arabidopsis thaliana
AT1G65840 2.0kb upstream 2.0kb upstream 5245 true Chr1: 24487780-24493024 Arabidopsis thaliana
AT1G65840 2.0kb upstream 2.0kb upstream 2000 false Chr1: 24487780-24489779 Arabidopsis thaliana
AT1G65840 2.0kb downstream 2.0kb downstream 5245 true Chr1: 24489780-24495024 Arabidopsis thaliana
AT1G65840 2.0kb downstream 2.0kb downstream 2000 false Chr1: 24493025-24495024 Arabidopsis thaliana
AT1G65840 5.0kb upstream 5.0kb upstream 8245 true Chr1: 24484780-24493024 Arabidopsis thaliana
AT1G65840 5.0kb upstream 5.0kb upstream 5000 false Chr1: 24484780-24489779 Arabidopsis thaliana
AT1G65840 5.0kb downstream 5.0kb downstream 8245 true Chr1: 24489780-24498024 Arabidopsis thaliana
AT1G65840 5.0kb downstream 5.0kb downstream 5000 false Chr1: 24493025-24498024 Arabidopsis thaliana
AT1G65840 10.0kb upstream 10.0kb upstream 13245 true Chr1: 24479780-24493024 Arabidopsis thaliana
AT1G65840 10.0kb upstream 10.0kb upstream 10000 false Chr1: 24479780-24489779 Arabidopsis thaliana
AT1G65840 10.0kb downstream 10.0kb downstream 13245 true Chr1: 24489780-24503024 Arabidopsis thaliana
AT1G65840 10.0kb downstream 10.0kb downstream 10000 false Chr1: 24493025-24503024 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122366027 5261 Brassicaceae View MSA
123835640 5264 Brassicales-Malvales View MSA
124336999 5266 SBM View MSA
124238146 5268 Malvidae View MSA
124061702 5270 Rosid View MSA
123740363 5271 Pentapetalae View MSA
122792459 5272 Eudicot View MSA
122049478 5273 Angiosperm View MSA
121311425 5274 Embryophyte View MSA
123428250 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.502        
cufflinks 17.765        
cufflinks 9.341       Low
cufflinks 19.942        
cufflinks 8.491       Low
cufflinks 29.815     High High

0 Strain