Gene : AT1G65700 A. thaliana TAIR10
Defline:  (1 of 1) K12627 - U6 snRNA-associated Sm-like protein LSm8 (LSM8) Genomic Order:  5501
Name:  ? AT1G65700 Secondary Identifier:  ? PAC:19649434
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G65700 0.5kb upstream 0.5kb upstream 2592 true Chr1: 24434203-24436794 Arabidopsis thaliana
AT1G65700 0.5kb upstream 0.5kb upstream 500 false Chr1: 24436295-24436794 Arabidopsis thaliana
AT1G65700 0.5kb downstream 0.5kb downstream 2592 true Chr1: 24433703-24436294 Arabidopsis thaliana
AT1G65700 0.5kb downstream 0.5kb downstream 500 false Chr1: 24433703-24434202 Arabidopsis thaliana
AT1G65700 1.0kb upstream 1.0kb upstream 3092 true Chr1: 24434203-24437294 Arabidopsis thaliana
AT1G65700 1.0kb upstream 1.0kb upstream 1000 false Chr1: 24436295-24437294 Arabidopsis thaliana
AT1G65700 1.0kb downstream 1.0kb downstream 3092 true Chr1: 24433203-24436294 Arabidopsis thaliana
AT1G65700 1.0kb downstream 1.0kb downstream 1000 false Chr1: 24433203-24434202 Arabidopsis thaliana
AT1G65700 2.0kb upstream 2.0kb upstream 4092 true Chr1: 24434203-24438294 Arabidopsis thaliana
AT1G65700 2.0kb upstream 2.0kb upstream 2000 false Chr1: 24436295-24438294 Arabidopsis thaliana
AT1G65700 2.0kb downstream 2.0kb downstream 4092 true Chr1: 24432203-24436294 Arabidopsis thaliana
AT1G65700 2.0kb downstream 2.0kb downstream 2000 false Chr1: 24432203-24434202 Arabidopsis thaliana
AT1G65700 5.0kb upstream 5.0kb upstream 7092 true Chr1: 24434203-24441294 Arabidopsis thaliana
AT1G65700 5.0kb upstream 5.0kb upstream 5000 false Chr1: 24436295-24441294 Arabidopsis thaliana
AT1G65700 5.0kb downstream 5.0kb downstream 7092 true Chr1: 24429203-24436294 Arabidopsis thaliana
AT1G65700 5.0kb downstream 5.0kb downstream 5000 false Chr1: 24429203-24434202 Arabidopsis thaliana
AT1G65700 10.0kb upstream 10.0kb upstream 12092 true Chr1: 24434203-24446294 Arabidopsis thaliana
AT1G65700 10.0kb upstream 10.0kb upstream 10000 false Chr1: 24436295-24446294 Arabidopsis thaliana
AT1G65700 10.0kb downstream 10.0kb downstream 12092 true Chr1: 24424203-24436294 Arabidopsis thaliana
AT1G65700 10.0kb downstream 10.0kb downstream 10000 false Chr1: 24424203-24434202 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122328359 5261 Brassicaceae Singleton cluster - no MSA
123769718 5264 Brassicales-Malvales Singleton cluster - no MSA
124268271 5266 SBM Singleton cluster - no MSA
124249658 5268 Malvidae View MSA
124065490 5270 Rosid View MSA
123746583 5271 Pentapetalae View MSA
122790911 5272 Eudicot View MSA
122047376 5273 Angiosperm View MSA
121345088 5274 Embryophyte View MSA
123423767 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.476        
cufflinks 2.145       High
cufflinks 1.225        
cufflinks 1.841        
cufflinks 0.938       Low
cufflinks 1.918        

0 Strain