Gene : AT1G54050 A. thaliana TAIR10
Defline:  (1 of 1) PTHR11527//PTHR11527:SF106 - SMALL HEAT-SHOCK PROTEIN HSP20 FAMILY // 17.4 KDA CLASS III HEAT SHOCK PROTEIN Genomic Order:  4457
Name:  ? AT1G54050 Secondary Identifier:  ? PAC:19657290
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54050 0.5kb upstream 0.5kb upstream 1360 true Chr1: 20179422-20180781 Arabidopsis thaliana
AT1G54050 0.5kb upstream 0.5kb upstream 500 false Chr1: 20180282-20180781 Arabidopsis thaliana
AT1G54050 0.5kb downstream 0.5kb downstream 1360 true Chr1: 20178922-20180281 Arabidopsis thaliana
AT1G54050 0.5kb downstream 0.5kb downstream 500 false Chr1: 20178922-20179421 Arabidopsis thaliana
AT1G54050 1.0kb upstream 1.0kb upstream 1860 true Chr1: 20179422-20181281 Arabidopsis thaliana
AT1G54050 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20180282-20181281 Arabidopsis thaliana
AT1G54050 1.0kb downstream 1.0kb downstream 1860 true Chr1: 20178422-20180281 Arabidopsis thaliana
AT1G54050 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20178422-20179421 Arabidopsis thaliana
AT1G54050 2.0kb upstream 2.0kb upstream 2860 true Chr1: 20179422-20182281 Arabidopsis thaliana
AT1G54050 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20180282-20182281 Arabidopsis thaliana
AT1G54050 2.0kb downstream 2.0kb downstream 2860 true Chr1: 20177422-20180281 Arabidopsis thaliana
AT1G54050 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20177422-20179421 Arabidopsis thaliana
AT1G54050 5.0kb upstream 5.0kb upstream 5860 true Chr1: 20179422-20185281 Arabidopsis thaliana
AT1G54050 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20180282-20185281 Arabidopsis thaliana
AT1G54050 5.0kb downstream 5.0kb downstream 5860 true Chr1: 20174422-20180281 Arabidopsis thaliana
AT1G54050 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20174422-20179421 Arabidopsis thaliana
AT1G54050 10.0kb upstream 10.0kb upstream 10860 true Chr1: 20179422-20190281 Arabidopsis thaliana
AT1G54050 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20180282-20190281 Arabidopsis thaliana
AT1G54050 10.0kb downstream 10.0kb downstream 10860 true Chr1: 20169422-20180281 Arabidopsis thaliana
AT1G54050 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20169422-20179421 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026485 5273 Angiosperm View MSA
122373667 5261 Brassicaceae View MSA
123828452 5264 Brassicales-Malvales View MSA
124343503 5266 SBM View MSA
124240958 5268 Malvidae View MSA
124068191 5270 Rosid View MSA
123744962 5271 Pentapetalae View MSA
122787860 5272 Eudicot View MSA
121352128 5274 Embryophyte View MSA
123382557 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.944        
cufflinks 15.157       High
cufflinks 12.886        
cufflinks 13.932        
cufflinks 10.016        
cufflinks 10.179        

0 Strain