Gene : RSH3 A. thaliana TAIR10
Primary Identifier:  ? AT1G54130 Defline:  (1 of 2) 2.7.6.5//3.2.1.37//3.2.1.55 - GTP diphosphokinase / Stringent factor // Xylan 1,4-beta-xylosidase / Xylobiase // Non-reducing end alpha-L-arabinofuranosidase / Arabinosidase
Genomic Order:  4467 Name:  ? AT1G54130
Secondary Identifier:  ? PAC:19653206
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Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54130 0.5kb upstream 0.5kb upstream 3570 true Chr1: 20210373-20213942 Arabidopsis thaliana
AT1G54130 0.5kb upstream 0.5kb upstream 500 false Chr1: 20210373-20210872 Arabidopsis thaliana
AT1G54130 0.5kb downstream 0.5kb downstream 3570 true Chr1: 20210873-20214442 Arabidopsis thaliana
AT1G54130 0.5kb downstream 0.5kb downstream 500 false Chr1: 20213943-20214442 Arabidopsis thaliana
AT1G54130 1.0kb upstream 1.0kb upstream 4070 true Chr1: 20209873-20213942 Arabidopsis thaliana
AT1G54130 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20209873-20210872 Arabidopsis thaliana
AT1G54130 1.0kb downstream 1.0kb downstream 4070 true Chr1: 20210873-20214942 Arabidopsis thaliana
AT1G54130 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20213943-20214942 Arabidopsis thaliana
AT1G54130 2.0kb upstream 2.0kb upstream 5070 true Chr1: 20208873-20213942 Arabidopsis thaliana
AT1G54130 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20208873-20210872 Arabidopsis thaliana
AT1G54130 2.0kb downstream 2.0kb downstream 5070 true Chr1: 20210873-20215942 Arabidopsis thaliana
AT1G54130 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20213943-20215942 Arabidopsis thaliana
AT1G54130 5.0kb upstream 5.0kb upstream 8070 true Chr1: 20205873-20213942 Arabidopsis thaliana
AT1G54130 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20205873-20210872 Arabidopsis thaliana
AT1G54130 5.0kb downstream 5.0kb downstream 8070 true Chr1: 20210873-20218942 Arabidopsis thaliana
AT1G54130 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20213943-20218942 Arabidopsis thaliana
AT1G54130 10.0kb upstream 10.0kb upstream 13070 true Chr1: 20200873-20213942 Arabidopsis thaliana
AT1G54130 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20200873-20210872 Arabidopsis thaliana
AT1G54130 10.0kb downstream 10.0kb downstream 13070 true Chr1: 20210873-20223942 Arabidopsis thaliana
AT1G54130 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20213943-20223942 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370873 5261 Brassicaceae View MSA
123837130 5264 Brassicales-Malvales View MSA
124344190 5266 SBM View MSA
124244390 5268 Malvidae View MSA
124067255 5270 Rosid View MSA
123738848 5271 Pentapetalae View MSA
122789814 5272 Eudicot View MSA
122044078 5273 Angiosperm View MSA
121346145 5274 Embryophyte View MSA
123428478 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 27.353        
cufflinks 18.134       Low
cufflinks 29.48     High  
cufflinks 24.735        
cufflinks 43.669     High High
cufflinks 18.129       Low

0 Strain