Gene : PAE1 A. thaliana TAIR10
Primary Identifier:  ? AT1G53850 Defline:  (1 of 2) K02729 - 20S proteasome subunit alpha 5 (PSMA5)
Genomic Order:  4434 Name:  ? AT1G53850
Secondary Identifier:  ? PAC:19652641
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Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53850 0.5kb upstream 0.5kb upstream 2563 true Chr1: 20103953-20106515 Arabidopsis thaliana
AT1G53850 0.5kb upstream 0.5kb upstream 500 false Chr1: 20106016-20106515 Arabidopsis thaliana
AT1G53850 0.5kb downstream 0.5kb downstream 2563 true Chr1: 20103453-20106015 Arabidopsis thaliana
AT1G53850 0.5kb downstream 0.5kb downstream 500 false Chr1: 20103453-20103952 Arabidopsis thaliana
AT1G53850 1.0kb upstream 1.0kb upstream 3063 true Chr1: 20103953-20107015 Arabidopsis thaliana
AT1G53850 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20106016-20107015 Arabidopsis thaliana
AT1G53850 1.0kb downstream 1.0kb downstream 3063 true Chr1: 20102953-20106015 Arabidopsis thaliana
AT1G53850 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20102953-20103952 Arabidopsis thaliana
AT1G53850 2.0kb upstream 2.0kb upstream 4063 true Chr1: 20103953-20108015 Arabidopsis thaliana
AT1G53850 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20106016-20108015 Arabidopsis thaliana
AT1G53850 2.0kb downstream 2.0kb downstream 4063 true Chr1: 20101953-20106015 Arabidopsis thaliana
AT1G53850 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20101953-20103952 Arabidopsis thaliana
AT1G53850 5.0kb upstream 5.0kb upstream 7063 true Chr1: 20103953-20111015 Arabidopsis thaliana
AT1G53850 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20106016-20111015 Arabidopsis thaliana
AT1G53850 5.0kb downstream 5.0kb downstream 7063 true Chr1: 20098953-20106015 Arabidopsis thaliana
AT1G53850 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20098953-20103952 Arabidopsis thaliana
AT1G53850 10.0kb upstream 10.0kb upstream 12063 true Chr1: 20103953-20116015 Arabidopsis thaliana
AT1G53850 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20106016-20116015 Arabidopsis thaliana
AT1G53850 10.0kb downstream 10.0kb downstream 12063 true Chr1: 20093953-20106015 Arabidopsis thaliana
AT1G53850 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20093953-20103952 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379304 5261 Brassicaceae View MSA
123840672 5264 Brassicales-Malvales View MSA
124336994 5266 SBM View MSA
124242930 5268 Malvidae View MSA
124064376 5270 Rosid View MSA
123750167 5271 Pentapetalae View MSA
122792406 5272 Eudicot View MSA
122044195 5273 Angiosperm View MSA
121347663 5274 Embryophyte View MSA
123428199 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.854        
cufflinks 16.311        
cufflinks 10.474       Low
cufflinks 16.678        
cufflinks 11.396        
cufflinks 18.553       High

0 Strain