Gene : PME2 A. thaliana TAIR10
Primary Identifier:  ? AT1G53830 Defline:  (1 of 2) PTHR31707//PTHR31707:SF55 - FAMILY NOT NAMED // PECTINESTERASE 2-RELATED
Genomic Order:  4432 Name:  ? AT1G53830
Secondary Identifier:  ? PAC:19654677
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1081 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

Correlated Expression Displayer

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53830 0.5kb upstream 0.5kb upstream 2868 true Chr1: 20098022-20100889 Arabidopsis thaliana
AT1G53830 0.5kb upstream 0.5kb upstream 500 false Chr1: 20098022-20098521 Arabidopsis thaliana
AT1G53830 0.5kb downstream 0.5kb downstream 2868 true Chr1: 20098522-20101389 Arabidopsis thaliana
AT1G53830 0.5kb downstream 0.5kb downstream 500 false Chr1: 20100890-20101389 Arabidopsis thaliana
AT1G53830 1.0kb upstream 1.0kb upstream 3368 true Chr1: 20097522-20100889 Arabidopsis thaliana
AT1G53830 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20097522-20098521 Arabidopsis thaliana
AT1G53830 1.0kb downstream 1.0kb downstream 3368 true Chr1: 20098522-20101889 Arabidopsis thaliana
AT1G53830 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20100890-20101889 Arabidopsis thaliana
AT1G53830 2.0kb upstream 2.0kb upstream 4368 true Chr1: 20096522-20100889 Arabidopsis thaliana
AT1G53830 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20096522-20098521 Arabidopsis thaliana
AT1G53830 2.0kb downstream 2.0kb downstream 4368 true Chr1: 20098522-20102889 Arabidopsis thaliana
AT1G53830 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20100890-20102889 Arabidopsis thaliana
AT1G53830 5.0kb upstream 5.0kb upstream 7368 true Chr1: 20093522-20100889 Arabidopsis thaliana
AT1G53830 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20093522-20098521 Arabidopsis thaliana
AT1G53830 5.0kb downstream 5.0kb downstream 7368 true Chr1: 20098522-20105889 Arabidopsis thaliana
AT1G53830 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20100890-20105889 Arabidopsis thaliana
AT1G53830 10.0kb upstream 10.0kb upstream 12368 true Chr1: 20088522-20100889 Arabidopsis thaliana
AT1G53830 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20088522-20098521 Arabidopsis thaliana
AT1G53830 10.0kb downstream 10.0kb downstream 12368 true Chr1: 20098522-20110889 Arabidopsis thaliana
AT1G53830 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20100890-20110889 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365332 5261 Brassicaceae View MSA
123841223 5264 Brassicales-Malvales View MSA
124350468 5266 SBM View MSA
124246887 5268 Malvidae View MSA
124060766 5270 Rosid View MSA
123741705 5271 Pentapetalae View MSA
122792272 5272 Eudicot View MSA
122051530 5273 Angiosperm View MSA
121350573 5274 Embryophyte View MSA
123381802 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.669        
cufflinks 0.46        
cufflinks 0.432        
cufflinks 1.968        
cufflinks 0.842        
cufflinks 3.366       High

0 Strain