Gene : AT1G53800 A. thaliana TAIR10
Defline:  (1 of 2) PF07460 - NUMOD3 motif (2 copies) (NUMOD3) Genomic Order:  4429
Name:  ? AT1G53800 Secondary Identifier:  ? PAC:19657971
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53800 0.5kb upstream 0.5kb upstream 3302 true Chr1: 20081199-20084500 Arabidopsis thaliana
AT1G53800 0.5kb upstream 0.5kb upstream 500 false Chr1: 20081199-20081698 Arabidopsis thaliana
AT1G53800 0.5kb downstream 0.5kb downstream 3302 true Chr1: 20081699-20085000 Arabidopsis thaliana
AT1G53800 0.5kb downstream 0.5kb downstream 500 false Chr1: 20084501-20085000 Arabidopsis thaliana
AT1G53800 1.0kb upstream 1.0kb upstream 3802 true Chr1: 20080699-20084500 Arabidopsis thaliana
AT1G53800 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20080699-20081698 Arabidopsis thaliana
AT1G53800 1.0kb downstream 1.0kb downstream 3802 true Chr1: 20081699-20085500 Arabidopsis thaliana
AT1G53800 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20084501-20085500 Arabidopsis thaliana
AT1G53800 2.0kb upstream 2.0kb upstream 4802 true Chr1: 20079699-20084500 Arabidopsis thaliana
AT1G53800 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20079699-20081698 Arabidopsis thaliana
AT1G53800 2.0kb downstream 2.0kb downstream 4802 true Chr1: 20081699-20086500 Arabidopsis thaliana
AT1G53800 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20084501-20086500 Arabidopsis thaliana
AT1G53800 5.0kb upstream 5.0kb upstream 7802 true Chr1: 20076699-20084500 Arabidopsis thaliana
AT1G53800 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20076699-20081698 Arabidopsis thaliana
AT1G53800 5.0kb downstream 5.0kb downstream 7802 true Chr1: 20081699-20089500 Arabidopsis thaliana
AT1G53800 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20084501-20089500 Arabidopsis thaliana
AT1G53800 10.0kb upstream 10.0kb upstream 12802 true Chr1: 20071699-20084500 Arabidopsis thaliana
AT1G53800 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20071699-20081698 Arabidopsis thaliana
AT1G53800 10.0kb downstream 10.0kb downstream 12802 true Chr1: 20081699-20094500 Arabidopsis thaliana
AT1G53800 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20084501-20094500 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380807 5261 Brassicaceae View MSA
123828518 5264 Brassicales-Malvales View MSA
124336898 5266 SBM View MSA
124241645 5268 Malvidae View MSA
124061366 5270 Rosid View MSA
123747268 5271 Pentapetalae View MSA
122788569 5272 Eudicot View MSA
122047787 5273 Angiosperm View MSA
121349375 5274 Embryophyte View MSA
123428133 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.522        
cufflinks 3.671        
cufflinks 15.236       High
cufflinks 3.299        
cufflinks 10.003        
cufflinks 2.799       Low

0 Strain