Gene : AT1G53560 A. thaliana TAIR10
Defline:  (1 of 3) PTHR10052//PTHR10052:SF9 - 60S RIBOSOMAL PROTEIN L18A // SUBFAMILY NOT NAMED Genomic Order:  4400
Name:  ? AT1G53560 Secondary Identifier:  ? PAC:19656639
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53560 0.5kb upstream 0.5kb upstream 1742 true Chr1: 19984742-19986483 Arabidopsis thaliana
AT1G53560 0.5kb upstream 0.5kb upstream 500 false Chr1: 19985984-19986483 Arabidopsis thaliana
AT1G53560 0.5kb downstream 0.5kb downstream 1742 true Chr1: 19984242-19985983 Arabidopsis thaliana
AT1G53560 0.5kb downstream 0.5kb downstream 500 false Chr1: 19984242-19984741 Arabidopsis thaliana
AT1G53560 1.0kb upstream 1.0kb upstream 2242 true Chr1: 19984742-19986983 Arabidopsis thaliana
AT1G53560 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19985984-19986983 Arabidopsis thaliana
AT1G53560 1.0kb downstream 1.0kb downstream 2242 true Chr1: 19983742-19985983 Arabidopsis thaliana
AT1G53560 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19983742-19984741 Arabidopsis thaliana
AT1G53560 2.0kb upstream 2.0kb upstream 3242 true Chr1: 19984742-19987983 Arabidopsis thaliana
AT1G53560 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19985984-19987983 Arabidopsis thaliana
AT1G53560 2.0kb downstream 2.0kb downstream 3242 true Chr1: 19982742-19985983 Arabidopsis thaliana
AT1G53560 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19982742-19984741 Arabidopsis thaliana
AT1G53560 5.0kb upstream 5.0kb upstream 6242 true Chr1: 19984742-19990983 Arabidopsis thaliana
AT1G53560 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19985984-19990983 Arabidopsis thaliana
AT1G53560 5.0kb downstream 5.0kb downstream 6242 true Chr1: 19979742-19985983 Arabidopsis thaliana
AT1G53560 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19979742-19984741 Arabidopsis thaliana
AT1G53560 10.0kb upstream 10.0kb upstream 11242 true Chr1: 19984742-19995983 Arabidopsis thaliana
AT1G53560 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19985984-19995983 Arabidopsis thaliana
AT1G53560 10.0kb downstream 10.0kb downstream 11242 true Chr1: 19974742-19985983 Arabidopsis thaliana
AT1G53560 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19974742-19984741 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122374628 5261 Brassicaceae View MSA
123838223 5264 Brassicales-Malvales View MSA
124349045 5266 SBM View MSA
124249811 5268 Malvidae View MSA
124074454 5270 Rosid View MSA
123749667 5271 Pentapetalae View MSA
122791619 5272 Eudicot View MSA
122042118 5273 Angiosperm View MSA
121350772 5274 Embryophyte View MSA
123425775 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.085        
cufflinks 8.814       Low
cufflinks 17.043        
cufflinks 13.845        
cufflinks 22.085       High
cufflinks 8.64       Low

0 Strain