Gene : AT1G53380 A. thaliana TAIR10
Defline:  (1 of 12) PF04859 - Plant protein of unknown function (DUF641) (DUF641) Genomic Order:  4380
Name:  ? AT1G53380 Secondary Identifier:  ? PAC:19649474
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53380 0.5kb upstream 0.5kb upstream 3942 true Chr1: 19913076-19917017 Arabidopsis thaliana
AT1G53380 0.5kb upstream 0.5kb upstream 500 false Chr1: 19916518-19917017 Arabidopsis thaliana
AT1G53380 0.5kb downstream 0.5kb downstream 3942 true Chr1: 19912576-19916517 Arabidopsis thaliana
AT1G53380 0.5kb downstream 0.5kb downstream 500 false Chr1: 19912576-19913075 Arabidopsis thaliana
AT1G53380 1.0kb upstream 1.0kb upstream 4442 true Chr1: 19913076-19917517 Arabidopsis thaliana
AT1G53380 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19916518-19917517 Arabidopsis thaliana
AT1G53380 1.0kb downstream 1.0kb downstream 4442 true Chr1: 19912076-19916517 Arabidopsis thaliana
AT1G53380 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19912076-19913075 Arabidopsis thaliana
AT1G53380 2.0kb upstream 2.0kb upstream 5442 true Chr1: 19913076-19918517 Arabidopsis thaliana
AT1G53380 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19916518-19918517 Arabidopsis thaliana
AT1G53380 2.0kb downstream 2.0kb downstream 5442 true Chr1: 19911076-19916517 Arabidopsis thaliana
AT1G53380 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19911076-19913075 Arabidopsis thaliana
AT1G53380 5.0kb upstream 5.0kb upstream 8442 true Chr1: 19913076-19921517 Arabidopsis thaliana
AT1G53380 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19916518-19921517 Arabidopsis thaliana
AT1G53380 5.0kb downstream 5.0kb downstream 8442 true Chr1: 19908076-19916517 Arabidopsis thaliana
AT1G53380 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19908076-19913075 Arabidopsis thaliana
AT1G53380 10.0kb upstream 10.0kb upstream 13442 true Chr1: 19913076-19926517 Arabidopsis thaliana
AT1G53380 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19916518-19926517 Arabidopsis thaliana
AT1G53380 10.0kb downstream 10.0kb downstream 13442 true Chr1: 19903076-19916517 Arabidopsis thaliana
AT1G53380 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19903076-19913075 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041109 5273 Angiosperm View MSA
122360465 5261 Brassicaceae View MSA
123839806 5264 Brassicales-Malvales View MSA
124340185 5266 SBM View MSA
124252755 5268 Malvidae View MSA
124063143 5270 Rosid View MSA
123743668 5271 Pentapetalae View MSA
122791275 5272 Eudicot View MSA
121351569 5274 Embryophyte View MSA
123382231 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.817        
cufflinks 3.819        
cufflinks 3.021       Low
cufflinks 3.998        
cufflinks 2.823       Low
cufflinks 5.102       High

0 Strain