Gene : AT1G54120 A. thaliana TAIR10
Defline:  (1 of 2) PTHR34788:SF1 - F15I1.22 Genomic Order:  4466
Name:  ? AT1G54120 Secondary Identifier:  ? PAC:19655684
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G54120 0.5kb upstream 0.5kb upstream 1021 true Chr1: 20206520-20207540 Arabidopsis thaliana
AT1G54120 0.5kb upstream 0.5kb upstream 500 false Chr1: 20206520-20207019 Arabidopsis thaliana
AT1G54120 0.5kb downstream 0.5kb downstream 1021 true Chr1: 20207020-20208040 Arabidopsis thaliana
AT1G54120 0.5kb downstream 0.5kb downstream 500 false Chr1: 20207541-20208040 Arabidopsis thaliana
AT1G54120 1.0kb upstream 1.0kb upstream 1521 true Chr1: 20206020-20207540 Arabidopsis thaliana
AT1G54120 1.0kb upstream 1.0kb upstream 1000 false Chr1: 20206020-20207019 Arabidopsis thaliana
AT1G54120 1.0kb downstream 1.0kb downstream 1521 true Chr1: 20207020-20208540 Arabidopsis thaliana
AT1G54120 1.0kb downstream 1.0kb downstream 1000 false Chr1: 20207541-20208540 Arabidopsis thaliana
AT1G54120 2.0kb upstream 2.0kb upstream 2521 true Chr1: 20205020-20207540 Arabidopsis thaliana
AT1G54120 2.0kb upstream 2.0kb upstream 2000 false Chr1: 20205020-20207019 Arabidopsis thaliana
AT1G54120 2.0kb downstream 2.0kb downstream 2521 true Chr1: 20207020-20209540 Arabidopsis thaliana
AT1G54120 2.0kb downstream 2.0kb downstream 2000 false Chr1: 20207541-20209540 Arabidopsis thaliana
AT1G54120 5.0kb upstream 5.0kb upstream 5521 true Chr1: 20202020-20207540 Arabidopsis thaliana
AT1G54120 5.0kb upstream 5.0kb upstream 5000 false Chr1: 20202020-20207019 Arabidopsis thaliana
AT1G54120 5.0kb downstream 5.0kb downstream 5521 true Chr1: 20207020-20212540 Arabidopsis thaliana
AT1G54120 5.0kb downstream 5.0kb downstream 5000 false Chr1: 20207541-20212540 Arabidopsis thaliana
AT1G54120 10.0kb upstream 10.0kb upstream 10521 true Chr1: 20197020-20207540 Arabidopsis thaliana
AT1G54120 10.0kb upstream 10.0kb upstream 10000 false Chr1: 20197020-20207019 Arabidopsis thaliana
AT1G54120 10.0kb downstream 10.0kb downstream 10521 true Chr1: 20207020-20217540 Arabidopsis thaliana
AT1G54120 10.0kb downstream 10.0kb downstream 10000 false Chr1: 20207541-20217540 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026756 5273 Angiosperm View MSA
122377619 5261 Brassicaceae View MSA
123837432 5264 Brassicales-Malvales View MSA
124348237 5266 SBM View MSA
124248033 5268 Malvidae View MSA
124060408 5270 Rosid View MSA
123748070 5271 Pentapetalae View MSA
122790898 5272 Eudicot View MSA
121296533 5274 Embryophyte View MSA
123334681 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.051        
cufflinks 1.564        
cufflinks 1.952        
cufflinks 4.44       High
cufflinks 0.922       Low
cufflinks 3.174        

0 Strain