Gene : AT1G53180 A. thaliana TAIR10
Defline:  (1 of 2) PTHR33785:SF1 - GENOMIC DNA, CHROMOSOME 3, BAC CLONE:F4B12 Genomic Order:  4355
Name:  ? AT1G53180 Secondary Identifier:  ? PAC:19654466
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53180 0.5kb upstream 0.5kb upstream 1955 true Chr1: 19830941-19832895 Arabidopsis thaliana
AT1G53180 0.5kb upstream 0.5kb upstream 500 false Chr1: 19830941-19831440 Arabidopsis thaliana
AT1G53180 0.5kb downstream 0.5kb downstream 1955 true Chr1: 19831441-19833395 Arabidopsis thaliana
AT1G53180 0.5kb downstream 0.5kb downstream 500 false Chr1: 19832896-19833395 Arabidopsis thaliana
AT1G53180 1.0kb upstream 1.0kb upstream 2455 true Chr1: 19830441-19832895 Arabidopsis thaliana
AT1G53180 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19830441-19831440 Arabidopsis thaliana
AT1G53180 1.0kb downstream 1.0kb downstream 2455 true Chr1: 19831441-19833895 Arabidopsis thaliana
AT1G53180 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19832896-19833895 Arabidopsis thaliana
AT1G53180 2.0kb upstream 2.0kb upstream 3455 true Chr1: 19829441-19832895 Arabidopsis thaliana
AT1G53180 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19829441-19831440 Arabidopsis thaliana
AT1G53180 2.0kb downstream 2.0kb downstream 3455 true Chr1: 19831441-19834895 Arabidopsis thaliana
AT1G53180 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19832896-19834895 Arabidopsis thaliana
AT1G53180 5.0kb upstream 5.0kb upstream 6455 true Chr1: 19826441-19832895 Arabidopsis thaliana
AT1G53180 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19826441-19831440 Arabidopsis thaliana
AT1G53180 5.0kb downstream 5.0kb downstream 6455 true Chr1: 19831441-19837895 Arabidopsis thaliana
AT1G53180 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19832896-19837895 Arabidopsis thaliana
AT1G53180 10.0kb upstream 10.0kb upstream 11455 true Chr1: 19821441-19832895 Arabidopsis thaliana
AT1G53180 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19821441-19831440 Arabidopsis thaliana
AT1G53180 10.0kb downstream 10.0kb downstream 11455 true Chr1: 19831441-19842895 Arabidopsis thaliana
AT1G53180 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19832896-19842895 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361008 5261 Brassicaceae View MSA
123841674 5264 Brassicales-Malvales View MSA
124338493 5266 SBM View MSA
124250739 5268 Malvidae View MSA
124063782 5270 Rosid View MSA
123750914 5271 Pentapetalae View MSA
122795249 5272 Eudicot View MSA
122048968 5273 Angiosperm View MSA
121350568 5274 Embryophyte View MSA
123381799 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.894        
cufflinks 15.786        
cufflinks 0.836        
cufflinks 25.309       High
cufflinks 0.756        
cufflinks 16.197        

0 Strain