Gene : AT1G53280 A. thaliana TAIR10
Defline:  (1 of 2) K03152 - 4-methyl-5(b-hydroxyethyl)-thiazole monophosphate biosynthesis (thiJ) Genomic Order:  4365
Name:  ? AT1G53280 Secondary Identifier:  ? PAC:19657789
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53280 0.5kb upstream 0.5kb upstream 3120 true Chr1: 19864770-19867889 Arabidopsis thaliana
AT1G53280 0.5kb upstream 0.5kb upstream 500 false Chr1: 19867390-19867889 Arabidopsis thaliana
AT1G53280 0.5kb downstream 0.5kb downstream 3120 true Chr1: 19864270-19867389 Arabidopsis thaliana
AT1G53280 0.5kb downstream 0.5kb downstream 500 false Chr1: 19864270-19864769 Arabidopsis thaliana
AT1G53280 1.0kb upstream 1.0kb upstream 3620 true Chr1: 19864770-19868389 Arabidopsis thaliana
AT1G53280 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19867390-19868389 Arabidopsis thaliana
AT1G53280 1.0kb downstream 1.0kb downstream 3620 true Chr1: 19863770-19867389 Arabidopsis thaliana
AT1G53280 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19863770-19864769 Arabidopsis thaliana
AT1G53280 2.0kb upstream 2.0kb upstream 4620 true Chr1: 19864770-19869389 Arabidopsis thaliana
AT1G53280 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19867390-19869389 Arabidopsis thaliana
AT1G53280 2.0kb downstream 2.0kb downstream 4620 true Chr1: 19862770-19867389 Arabidopsis thaliana
AT1G53280 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19862770-19864769 Arabidopsis thaliana
AT1G53280 5.0kb upstream 5.0kb upstream 7620 true Chr1: 19864770-19872389 Arabidopsis thaliana
AT1G53280 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19867390-19872389 Arabidopsis thaliana
AT1G53280 5.0kb downstream 5.0kb downstream 7620 true Chr1: 19859770-19867389 Arabidopsis thaliana
AT1G53280 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19859770-19864769 Arabidopsis thaliana
AT1G53280 10.0kb upstream 10.0kb upstream 12620 true Chr1: 19864770-19877389 Arabidopsis thaliana
AT1G53280 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19867390-19877389 Arabidopsis thaliana
AT1G53280 10.0kb downstream 10.0kb downstream 12620 true Chr1: 19854770-19867389 Arabidopsis thaliana
AT1G53280 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19854770-19864769 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381524 5261 Brassicaceae View MSA
123835915 5264 Brassicales-Malvales View MSA
124343140 5266 SBM View MSA
124247297 5268 Malvidae View MSA
124063705 5270 Rosid View MSA
123739735 5271 Pentapetalae View MSA
122788199 5272 Eudicot View MSA
122047245 5273 Angiosperm View MSA
121350648 5274 Embryophyte View MSA
123428584 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.184     High High
cufflinks 32.917     High  
cufflinks 33.185     High  
cufflinks 31.35     High  
cufflinks 32.867     High  
cufflinks 28.525       Low

0 Strain