Gene : AT1G53110 A. thaliana TAIR10
Defline:  (1 of 5) PTHR32219:SF2 - PROTON PUMP-INTERACTOR 1-RELATED Genomic Order:  4347
Name:  ? AT1G53110 Secondary Identifier:  ? PAC:19657133
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G53110 0.5kb upstream 0.5kb upstream 2801 true Chr1: 19789689-19792489 Arabidopsis thaliana
AT1G53110 0.5kb upstream 0.5kb upstream 500 false Chr1: 19789689-19790188 Arabidopsis thaliana
AT1G53110 0.5kb downstream 0.5kb downstream 2801 true Chr1: 19790189-19792989 Arabidopsis thaliana
AT1G53110 0.5kb downstream 0.5kb downstream 500 false Chr1: 19792490-19792989 Arabidopsis thaliana
AT1G53110 1.0kb upstream 1.0kb upstream 3301 true Chr1: 19789189-19792489 Arabidopsis thaliana
AT1G53110 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19789189-19790188 Arabidopsis thaliana
AT1G53110 1.0kb downstream 1.0kb downstream 3301 true Chr1: 19790189-19793489 Arabidopsis thaliana
AT1G53110 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19792490-19793489 Arabidopsis thaliana
AT1G53110 2.0kb upstream 2.0kb upstream 4301 true Chr1: 19788189-19792489 Arabidopsis thaliana
AT1G53110 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19788189-19790188 Arabidopsis thaliana
AT1G53110 2.0kb downstream 2.0kb downstream 4301 true Chr1: 19790189-19794489 Arabidopsis thaliana
AT1G53110 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19792490-19794489 Arabidopsis thaliana
AT1G53110 5.0kb upstream 5.0kb upstream 7301 true Chr1: 19785189-19792489 Arabidopsis thaliana
AT1G53110 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19785189-19790188 Arabidopsis thaliana
AT1G53110 5.0kb downstream 5.0kb downstream 7301 true Chr1: 19790189-19797489 Arabidopsis thaliana
AT1G53110 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19792490-19797489 Arabidopsis thaliana
AT1G53110 10.0kb upstream 10.0kb upstream 12301 true Chr1: 19780189-19792489 Arabidopsis thaliana
AT1G53110 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19780189-19790188 Arabidopsis thaliana
AT1G53110 10.0kb downstream 10.0kb downstream 12301 true Chr1: 19790189-19802489 Arabidopsis thaliana
AT1G53110 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19792490-19802489 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122029387 5273 Angiosperm View MSA
122375131 5261 Brassicaceae View MSA
123800887 5264 Brassicales-Malvales View MSA
124298247 5266 SBM View MSA
124149939 5268 Malvidae View MSA
124051424 5270 Rosid View MSA
123620155 5271 Pentapetalae View MSA
122654571 5272 Eudicot View MSA
121298725 5274 Embryophyte View MSA
123336676 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.886       High
cufflinks 4.599        
cufflinks 4.259       Low
cufflinks 5.748       High
cufflinks 4.722        
cufflinks 4.401        

0 Strain