Gene : GPCR A. thaliana TAIR10
Primary Identifier:  ? AT1G52920 Defline:  (1 of 2) PTHR12736//PTHR12736:SF13 - LANC-LIKE PROTEIN // SUBFAMILY NOT NAMED
Genomic Order:  4326 Name:  ? AT1G52920
Secondary Identifier:  ? PAC:19658331
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0 Pathways

Genomics

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Expression

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52920 0.5kb upstream 0.5kb upstream 2278 true Chr1: 19709275-19711552 Arabidopsis thaliana
AT1G52920 0.5kb upstream 0.5kb upstream 500 false Chr1: 19711053-19711552 Arabidopsis thaliana
AT1G52920 0.5kb downstream 0.5kb downstream 2278 true Chr1: 19708775-19711052 Arabidopsis thaliana
AT1G52920 0.5kb downstream 0.5kb downstream 500 false Chr1: 19708775-19709274 Arabidopsis thaliana
AT1G52920 1.0kb upstream 1.0kb upstream 2778 true Chr1: 19709275-19712052 Arabidopsis thaliana
AT1G52920 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19711053-19712052 Arabidopsis thaliana
AT1G52920 1.0kb downstream 1.0kb downstream 2778 true Chr1: 19708275-19711052 Arabidopsis thaliana
AT1G52920 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19708275-19709274 Arabidopsis thaliana
AT1G52920 2.0kb upstream 2.0kb upstream 3778 true Chr1: 19709275-19713052 Arabidopsis thaliana
AT1G52920 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19711053-19713052 Arabidopsis thaliana
AT1G52920 2.0kb downstream 2.0kb downstream 3778 true Chr1: 19707275-19711052 Arabidopsis thaliana
AT1G52920 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19707275-19709274 Arabidopsis thaliana
AT1G52920 5.0kb upstream 5.0kb upstream 6778 true Chr1: 19709275-19716052 Arabidopsis thaliana
AT1G52920 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19711053-19716052 Arabidopsis thaliana
AT1G52920 5.0kb downstream 5.0kb downstream 6778 true Chr1: 19704275-19711052 Arabidopsis thaliana
AT1G52920 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19704275-19709274 Arabidopsis thaliana
AT1G52920 10.0kb upstream 10.0kb upstream 11778 true Chr1: 19709275-19721052 Arabidopsis thaliana
AT1G52920 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19711053-19721052 Arabidopsis thaliana
AT1G52920 10.0kb downstream 10.0kb downstream 11778 true Chr1: 19699275-19711052 Arabidopsis thaliana
AT1G52920 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19699275-19709274 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365963 5261 Brassicaceae View MSA
123829085 5264 Brassicales-Malvales View MSA
124344836 5266 SBM View MSA
124239903 5268 Malvidae View MSA
124065113 5270 Rosid View MSA
123737530 5271 Pentapetalae View MSA
122788012 5272 Eudicot View MSA
122042680 5273 Angiosperm View MSA
121348546 5274 Embryophyte View MSA
123425935 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.702        
cufflinks 2.415       High
cufflinks 0.512       Low
cufflinks 2.112        
cufflinks 0.797        
cufflinks 1.983        

0 Strain