Gene : NAM A. thaliana TAIR10
Primary Identifier:  ? AT1G52880 Defline:  (1 of 3) PTHR31719//PTHR31719:SF9 - FAMILY NOT NAMED // ATNAC2-RELATED
Genomic Order:  4321 Name:  ? AT1G52880
Secondary Identifier:  ? PAC:19656323
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

4 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52880 0.5kb upstream 0.5kb upstream 2086 true Chr1: 19688957-19691042 Arabidopsis thaliana
AT1G52880 0.5kb upstream 0.5kb upstream 500 false Chr1: 19690543-19691042 Arabidopsis thaliana
AT1G52880 0.5kb downstream 0.5kb downstream 2086 true Chr1: 19688457-19690542 Arabidopsis thaliana
AT1G52880 0.5kb downstream 0.5kb downstream 500 false Chr1: 19688457-19688956 Arabidopsis thaliana
AT1G52880 1.0kb upstream 1.0kb upstream 2586 true Chr1: 19688957-19691542 Arabidopsis thaliana
AT1G52880 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19690543-19691542 Arabidopsis thaliana
AT1G52880 1.0kb downstream 1.0kb downstream 2586 true Chr1: 19687957-19690542 Arabidopsis thaliana
AT1G52880 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19687957-19688956 Arabidopsis thaliana
AT1G52880 2.0kb upstream 2.0kb upstream 3586 true Chr1: 19688957-19692542 Arabidopsis thaliana
AT1G52880 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19690543-19692542 Arabidopsis thaliana
AT1G52880 2.0kb downstream 2.0kb downstream 3586 true Chr1: 19686957-19690542 Arabidopsis thaliana
AT1G52880 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19686957-19688956 Arabidopsis thaliana
AT1G52880 5.0kb upstream 5.0kb upstream 6586 true Chr1: 19688957-19695542 Arabidopsis thaliana
AT1G52880 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19690543-19695542 Arabidopsis thaliana
AT1G52880 5.0kb downstream 5.0kb downstream 6586 true Chr1: 19683957-19690542 Arabidopsis thaliana
AT1G52880 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19683957-19688956 Arabidopsis thaliana
AT1G52880 10.0kb upstream 10.0kb upstream 11586 true Chr1: 19688957-19700542 Arabidopsis thaliana
AT1G52880 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19690543-19700542 Arabidopsis thaliana
AT1G52880 10.0kb downstream 10.0kb downstream 11586 true Chr1: 19678957-19690542 Arabidopsis thaliana
AT1G52880 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19678957-19688956 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377636 5261 Brassicaceae View MSA
123801587 5264 Brassicales-Malvales View MSA
124298870 5266 SBM View MSA
124150414 5268 Malvidae View MSA
123876029 5270 Rosid View MSA
123745074 5271 Pentapetalae View MSA
122796583 5272 Eudicot View MSA
122049237 5273 Angiosperm View MSA
121349958 5274 Embryophyte View MSA
123381516 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.343        
cufflinks 0.869       Low
cufflinks 6.91        
cufflinks 2.105        
cufflinks 8.358        
cufflinks 0.744       Low

0 Strain