Gene : LUP2 A. thaliana TAIR10
Primary Identifier:  ? AT1G78960 Defline:  (1 of 1) 4.2.1.128//5.4.99.39//5.4.99.40//5.4.99.41 - Lupan-3-beta,20-diol synthase // Beta-amyrin synthase / 2,3-oxidosqualene beta-amyrin cyclase // Alpha-amyrin synthase / 2,3-oxidosqualene alpha-amyrin cyclase // Lupeol synthase
Genomic Order:  6876 Name:  ? AT1G78960
Secondary Identifier:  ? PAC:19650113
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Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-112 Arabidopsis thaliana pathologic  
Athaliana PWY-5377 Arabidopsis thaliana pathologic  

Genomics

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Expression

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Cufflinks Score Displayer

 

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2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G78960 0.5kb upstream 0.5kb upstream 5294 true Chr1: 29695970-29701263 Arabidopsis thaliana
AT1G78960 0.5kb upstream 0.5kb upstream 500 false Chr1: 29695970-29696469 Arabidopsis thaliana
AT1G78960 0.5kb downstream 0.5kb downstream 5294 true Chr1: 29696470-29701763 Arabidopsis thaliana
AT1G78960 0.5kb downstream 0.5kb downstream 500 false Chr1: 29701264-29701763 Arabidopsis thaliana
AT1G78960 1.0kb upstream 1.0kb upstream 5794 true Chr1: 29695470-29701263 Arabidopsis thaliana
AT1G78960 1.0kb upstream 1.0kb upstream 1000 false Chr1: 29695470-29696469 Arabidopsis thaliana
AT1G78960 1.0kb downstream 1.0kb downstream 5794 true Chr1: 29696470-29702263 Arabidopsis thaliana
AT1G78960 1.0kb downstream 1.0kb downstream 1000 false Chr1: 29701264-29702263 Arabidopsis thaliana
AT1G78960 2.0kb upstream 2.0kb upstream 6794 true Chr1: 29694470-29701263 Arabidopsis thaliana
AT1G78960 2.0kb upstream 2.0kb upstream 2000 false Chr1: 29694470-29696469 Arabidopsis thaliana
AT1G78960 2.0kb downstream 2.0kb downstream 6794 true Chr1: 29696470-29703263 Arabidopsis thaliana
AT1G78960 2.0kb downstream 2.0kb downstream 2000 false Chr1: 29701264-29703263 Arabidopsis thaliana
AT1G78960 5.0kb upstream 5.0kb upstream 9794 true Chr1: 29691470-29701263 Arabidopsis thaliana
AT1G78960 5.0kb upstream 5.0kb upstream 5000 false Chr1: 29691470-29696469 Arabidopsis thaliana
AT1G78960 5.0kb downstream 5.0kb downstream 9794 true Chr1: 29696470-29706263 Arabidopsis thaliana
AT1G78960 5.0kb downstream 5.0kb downstream 5000 false Chr1: 29701264-29706263 Arabidopsis thaliana
AT1G78960 10.0kb upstream 10.0kb upstream 14794 true Chr1: 29686470-29701263 Arabidopsis thaliana
AT1G78960 10.0kb upstream 10.0kb upstream 10000 false Chr1: 29686470-29696469 Arabidopsis thaliana
AT1G78960 10.0kb downstream 10.0kb downstream 14794 true Chr1: 29696470-29711263 Arabidopsis thaliana
AT1G78960 10.0kb downstream 10.0kb downstream 10000 false Chr1: 29701264-29711263 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
121791741 5273 Angiosperm View MSA
122370947 5261 Brassicaceae View MSA
123837659 5264 Brassicales-Malvales View MSA
124341185 5266 SBM View MSA
124240191 5268 Malvidae View MSA
124062069 5270 Rosid View MSA
123738080 5271 Pentapetalae View MSA
122788516 5272 Eudicot View MSA
121063041 5274 Embryophyte View MSA
123102827 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.012        
cufflinks 4.295       High
cufflinks 1.931        
cufflinks 4.614       High
cufflinks 2.113        
cufflinks 2.732        

0 Strain