Gene : AT1G52600 A. thaliana TAIR10
Defline:  (1 of 2) K13280 - signal peptidase, endoplasmic reticulum-type (SEC11, sipW) Genomic Order:  4291
Name:  ? AT1G52600 Secondary Identifier:  ? PAC:19651040
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Genomics

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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52600 0.5kb upstream 0.5kb upstream 2709 true Chr1: 19589987-19592695 Arabidopsis thaliana
AT1G52600 0.5kb upstream 0.5kb upstream 500 false Chr1: 19589987-19590486 Arabidopsis thaliana
AT1G52600 0.5kb downstream 0.5kb downstream 2709 true Chr1: 19590487-19593195 Arabidopsis thaliana
AT1G52600 0.5kb downstream 0.5kb downstream 500 false Chr1: 19592696-19593195 Arabidopsis thaliana
AT1G52600 1.0kb upstream 1.0kb upstream 3209 true Chr1: 19589487-19592695 Arabidopsis thaliana
AT1G52600 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19589487-19590486 Arabidopsis thaliana
AT1G52600 1.0kb downstream 1.0kb downstream 3209 true Chr1: 19590487-19593695 Arabidopsis thaliana
AT1G52600 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19592696-19593695 Arabidopsis thaliana
AT1G52600 2.0kb upstream 2.0kb upstream 4209 true Chr1: 19588487-19592695 Arabidopsis thaliana
AT1G52600 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19588487-19590486 Arabidopsis thaliana
AT1G52600 2.0kb downstream 2.0kb downstream 4209 true Chr1: 19590487-19594695 Arabidopsis thaliana
AT1G52600 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19592696-19594695 Arabidopsis thaliana
AT1G52600 5.0kb upstream 5.0kb upstream 7209 true Chr1: 19585487-19592695 Arabidopsis thaliana
AT1G52600 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19585487-19590486 Arabidopsis thaliana
AT1G52600 5.0kb downstream 5.0kb downstream 7209 true Chr1: 19590487-19597695 Arabidopsis thaliana
AT1G52600 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19592696-19597695 Arabidopsis thaliana
AT1G52600 10.0kb upstream 10.0kb upstream 12209 true Chr1: 19580487-19592695 Arabidopsis thaliana
AT1G52600 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19580487-19590486 Arabidopsis thaliana
AT1G52600 10.0kb downstream 10.0kb downstream 12209 true Chr1: 19590487-19602695 Arabidopsis thaliana
AT1G52600 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19592696-19602695 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122370306 5261 Brassicaceae View MSA
123839617 5264 Brassicales-Malvales View MSA
124341362 5266 SBM View MSA
124248666 5268 Malvidae View MSA
124074167 5270 Rosid View MSA
123753125 5271 Pentapetalae View MSA
122796679 5272 Eudicot View MSA
122042298 5273 Angiosperm View MSA
121346820 5274 Embryophyte View MSA
123423864 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 20.883       High
cufflinks 16.877        
cufflinks 11.841       Low
cufflinks 17.818        
cufflinks 12.783       Low
cufflinks 18.379        

0 Strain