Gene : AT1G52330 A. thaliana TAIR10
Defline:  (1 of 1) PTHR31852//PTHR31852:SF17 - FAMILY NOT NAMED // EXPRESSED PROTEIN Genomic Order:  4262
Name:  ? AT1G52330 Secondary Identifier:  ? PAC:19653525
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52330 0.5kb upstream 0.5kb upstream 1472 true Chr1: 19488443-19489914 Arabidopsis thaliana
AT1G52330 0.5kb upstream 0.5kb upstream 500 false Chr1: 19488443-19488942 Arabidopsis thaliana
AT1G52330 0.5kb downstream 0.5kb downstream 1472 true Chr1: 19488943-19490414 Arabidopsis thaliana
AT1G52330 0.5kb downstream 0.5kb downstream 500 false Chr1: 19489915-19490414 Arabidopsis thaliana
AT1G52330 1.0kb upstream 1.0kb upstream 1972 true Chr1: 19487943-19489914 Arabidopsis thaliana
AT1G52330 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19487943-19488942 Arabidopsis thaliana
AT1G52330 1.0kb downstream 1.0kb downstream 1972 true Chr1: 19488943-19490914 Arabidopsis thaliana
AT1G52330 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19489915-19490914 Arabidopsis thaliana
AT1G52330 2.0kb upstream 2.0kb upstream 2972 true Chr1: 19486943-19489914 Arabidopsis thaliana
AT1G52330 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19486943-19488942 Arabidopsis thaliana
AT1G52330 2.0kb downstream 2.0kb downstream 2972 true Chr1: 19488943-19491914 Arabidopsis thaliana
AT1G52330 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19489915-19491914 Arabidopsis thaliana
AT1G52330 5.0kb upstream 5.0kb upstream 5972 true Chr1: 19483943-19489914 Arabidopsis thaliana
AT1G52330 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19483943-19488942 Arabidopsis thaliana
AT1G52330 5.0kb downstream 5.0kb downstream 5972 true Chr1: 19488943-19494914 Arabidopsis thaliana
AT1G52330 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19489915-19494914 Arabidopsis thaliana
AT1G52330 10.0kb upstream 10.0kb upstream 10972 true Chr1: 19478943-19489914 Arabidopsis thaliana
AT1G52330 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19478943-19488942 Arabidopsis thaliana
AT1G52330 10.0kb downstream 10.0kb downstream 10972 true Chr1: 19488943-19499914 Arabidopsis thaliana
AT1G52330 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19489915-19499914 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122379796 5261 Brassicaceae View MSA
123837924 5264 Brassicales-Malvales View MSA
124349389 5266 SBM View MSA
124246401 5268 Malvidae View MSA
124071575 5270 Rosid View MSA
123738145 5271 Pentapetalae View MSA
122793617 5272 Eudicot View MSA
122049008 5273 Angiosperm View MSA
121350992 5274 Embryophyte View MSA
123381962 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.038     Low Low
cufflinks 3.598        
cufflinks 0.053     Low  
cufflinks 4.602        
cufflinks 0.093     Low  
cufflinks 3.147        

0 Strain