Gene : AT1G52220 A. thaliana TAIR10
Defline:  (1 of 1) PTHR33222:SF3 - PROTEIN CURVATURE THYLAKOID 1C, CHLOROPLASTIC Genomic Order:  4250
Name:  ? AT1G52220 Secondary Identifier:  ? PAC:19651785
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52220 0.5kb upstream 0.5kb upstream 1629 true Chr1: 19453569-19455197 Arabidopsis thaliana
AT1G52220 0.5kb upstream 0.5kb upstream 500 false Chr1: 19454698-19455197 Arabidopsis thaliana
AT1G52220 0.5kb downstream 0.5kb downstream 1629 true Chr1: 19453069-19454697 Arabidopsis thaliana
AT1G52220 0.5kb downstream 0.5kb downstream 500 false Chr1: 19453069-19453568 Arabidopsis thaliana
AT1G52220 1.0kb upstream 1.0kb upstream 2129 true Chr1: 19453569-19455697 Arabidopsis thaliana
AT1G52220 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19454698-19455697 Arabidopsis thaliana
AT1G52220 1.0kb downstream 1.0kb downstream 2129 true Chr1: 19452569-19454697 Arabidopsis thaliana
AT1G52220 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19452569-19453568 Arabidopsis thaliana
AT1G52220 2.0kb upstream 2.0kb upstream 3129 true Chr1: 19453569-19456697 Arabidopsis thaliana
AT1G52220 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19454698-19456697 Arabidopsis thaliana
AT1G52220 2.0kb downstream 2.0kb downstream 3129 true Chr1: 19451569-19454697 Arabidopsis thaliana
AT1G52220 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19451569-19453568 Arabidopsis thaliana
AT1G52220 5.0kb upstream 5.0kb upstream 6129 true Chr1: 19453569-19459697 Arabidopsis thaliana
AT1G52220 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19454698-19459697 Arabidopsis thaliana
AT1G52220 5.0kb downstream 5.0kb downstream 6129 true Chr1: 19448569-19454697 Arabidopsis thaliana
AT1G52220 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19448569-19453568 Arabidopsis thaliana
AT1G52220 10.0kb upstream 10.0kb upstream 11129 true Chr1: 19453569-19464697 Arabidopsis thaliana
AT1G52220 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19454698-19464697 Arabidopsis thaliana
AT1G52220 10.0kb downstream 10.0kb downstream 11129 true Chr1: 19443569-19454697 Arabidopsis thaliana
AT1G52220 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19443569-19453568 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373372 5261 Brassicaceae View MSA
123830781 5264 Brassicales-Malvales View MSA
124339629 5266 SBM View MSA
124241644 5268 Malvidae View MSA
124068427 5270 Rosid View MSA
123747086 5271 Pentapetalae View MSA
122793406 5272 Eudicot View MSA
122042391 5273 Angiosperm View MSA
121347672 5274 Embryophyte View MSA
123425732 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 73.929     High  
cufflinks 1.16        
cufflinks 95.051     High  
cufflinks 0.961        
cufflinks 78.054     High  
cufflinks 0.338     Low Low

0 Strain