Gene : ROPGEF11 A. thaliana TAIR10
Primary Identifier:  ? AT1G52240 Defline:  (1 of 1) PTHR11886//PTHR11886:SF47//PTHR33101//PTHR33101:SF10 - DYNEIN LIGHT CHAIN // SUBFAMILY NOT NAMED // FAMILY NOT NAMED // RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR 8-RELATED
Genomic Order:  4252 Name:  ? AT1G52240
Secondary Identifier:  ? PAC:19652944
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0 Pathways

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52240 0.5kb upstream 0.5kb upstream 4321 true Chr1: 19455766-19460086 Arabidopsis thaliana
AT1G52240 0.5kb upstream 0.5kb upstream 500 false Chr1: 19459587-19460086 Arabidopsis thaliana
AT1G52240 0.5kb downstream 0.5kb downstream 4321 true Chr1: 19455266-19459586 Arabidopsis thaliana
AT1G52240 0.5kb downstream 0.5kb downstream 500 false Chr1: 19455266-19455765 Arabidopsis thaliana
AT1G52240 1.0kb upstream 1.0kb upstream 4821 true Chr1: 19455766-19460586 Arabidopsis thaliana
AT1G52240 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19459587-19460586 Arabidopsis thaliana
AT1G52240 1.0kb downstream 1.0kb downstream 4821 true Chr1: 19454766-19459586 Arabidopsis thaliana
AT1G52240 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19454766-19455765 Arabidopsis thaliana
AT1G52240 2.0kb upstream 2.0kb upstream 5821 true Chr1: 19455766-19461586 Arabidopsis thaliana
AT1G52240 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19459587-19461586 Arabidopsis thaliana
AT1G52240 2.0kb downstream 2.0kb downstream 5821 true Chr1: 19453766-19459586 Arabidopsis thaliana
AT1G52240 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19453766-19455765 Arabidopsis thaliana
AT1G52240 5.0kb upstream 5.0kb upstream 8821 true Chr1: 19455766-19464586 Arabidopsis thaliana
AT1G52240 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19459587-19464586 Arabidopsis thaliana
AT1G52240 5.0kb downstream 5.0kb downstream 8821 true Chr1: 19450766-19459586 Arabidopsis thaliana
AT1G52240 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19450766-19455765 Arabidopsis thaliana
AT1G52240 10.0kb upstream 10.0kb upstream 13821 true Chr1: 19455766-19469586 Arabidopsis thaliana
AT1G52240 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19459587-19469586 Arabidopsis thaliana
AT1G52240 10.0kb downstream 10.0kb downstream 13821 true Chr1: 19445766-19459586 Arabidopsis thaliana
AT1G52240 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19445766-19455765 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369150 5261 Brassicaceae View MSA
123799728 5264 Brassicales-Malvales View MSA
124297219 5266 SBM View MSA
124251603 5268 Malvidae View MSA
124069461 5270 Rosid View MSA
123751413 5271 Pentapetalae View MSA
122794787 5272 Eudicot View MSA
122041932 5273 Angiosperm View MSA
121309904 5274 Embryophyte View MSA
123347537 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.47        
cufflinks 2.289        
cufflinks 0.399        
cufflinks 2.38        
cufflinks 0.208     Low Low
cufflinks 2.162        

0 Strain