Gene : AT1G51980 A. thaliana TAIR10
Defline:  (1 of 2) K01412 - mitochondrial-processing peptidase subunit alpha [EC:3.4.24.64] (PMPCA, MAS2) Genomic Order:  4229
Name:  ? AT1G51980 Secondary Identifier:  ? PAC:19657629
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-3781 Arabidopsis thaliana pathologic  
Athaliana PWY-7279 Arabidopsis thaliana pathologic  

Genomics

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Gene Structure Displayer

Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G51980 0.5kb upstream 0.5kb upstream 4035 true Chr1: 19323382-19327416 Arabidopsis thaliana
AT1G51980 0.5kb upstream 0.5kb upstream 500 false Chr1: 19326917-19327416 Arabidopsis thaliana
AT1G51980 0.5kb downstream 0.5kb downstream 4035 true Chr1: 19322882-19326916 Arabidopsis thaliana
AT1G51980 0.5kb downstream 0.5kb downstream 500 false Chr1: 19322882-19323381 Arabidopsis thaliana
AT1G51980 1.0kb upstream 1.0kb upstream 4535 true Chr1: 19323382-19327916 Arabidopsis thaliana
AT1G51980 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19326917-19327916 Arabidopsis thaliana
AT1G51980 1.0kb downstream 1.0kb downstream 4535 true Chr1: 19322382-19326916 Arabidopsis thaliana
AT1G51980 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19322382-19323381 Arabidopsis thaliana
AT1G51980 2.0kb upstream 2.0kb upstream 5535 true Chr1: 19323382-19328916 Arabidopsis thaliana
AT1G51980 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19326917-19328916 Arabidopsis thaliana
AT1G51980 2.0kb downstream 2.0kb downstream 5535 true Chr1: 19321382-19326916 Arabidopsis thaliana
AT1G51980 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19321382-19323381 Arabidopsis thaliana
AT1G51980 5.0kb upstream 5.0kb upstream 8535 true Chr1: 19323382-19331916 Arabidopsis thaliana
AT1G51980 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19326917-19331916 Arabidopsis thaliana
AT1G51980 5.0kb downstream 5.0kb downstream 8535 true Chr1: 19318382-19326916 Arabidopsis thaliana
AT1G51980 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19318382-19323381 Arabidopsis thaliana
AT1G51980 10.0kb upstream 10.0kb upstream 13535 true Chr1: 19323382-19336916 Arabidopsis thaliana
AT1G51980 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19326917-19336916 Arabidopsis thaliana
AT1G51980 10.0kb downstream 10.0kb downstream 13535 true Chr1: 19313382-19326916 Arabidopsis thaliana
AT1G51980 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19313382-19323381 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041394 5273 Angiosperm View MSA
122370370 5261 Brassicaceae View MSA
123837486 5264 Brassicales-Malvales View MSA
124346987 5266 SBM View MSA
124244870 5268 Malvidae View MSA
124064083 5270 Rosid View MSA
123738249 5271 Pentapetalae View MSA
122789346 5272 Eudicot View MSA
121350423 5274 Embryophyte View MSA
123425006 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 23.164        
cufflinks 22.361        
cufflinks 20.72       Low
cufflinks 25.822        
cufflinks 21.463        
cufflinks 27.48       High

0 Strain