Gene : AT1G52690 A. thaliana TAIR10
Defline:  (1 of 9) KOG4744 - Uncharacterized conserved protein Genomic Order:  4300
Name:  ? AT1G52690 Secondary Identifier:  ? PAC:19654081
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52690 0.5kb upstream 0.5kb upstream 2290 true Chr1: 19619245-19621534 Arabidopsis thaliana
AT1G52690 0.5kb upstream 0.5kb upstream 500 false Chr1: 19619245-19619744 Arabidopsis thaliana
AT1G52690 0.5kb downstream 0.5kb downstream 2290 true Chr1: 19619745-19622034 Arabidopsis thaliana
AT1G52690 0.5kb downstream 0.5kb downstream 500 false Chr1: 19621535-19622034 Arabidopsis thaliana
AT1G52690 1.0kb upstream 1.0kb upstream 2790 true Chr1: 19618745-19621534 Arabidopsis thaliana
AT1G52690 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19618745-19619744 Arabidopsis thaliana
AT1G52690 1.0kb downstream 1.0kb downstream 2790 true Chr1: 19619745-19622534 Arabidopsis thaliana
AT1G52690 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19621535-19622534 Arabidopsis thaliana
AT1G52690 2.0kb upstream 2.0kb upstream 3790 true Chr1: 19617745-19621534 Arabidopsis thaliana
AT1G52690 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19617745-19619744 Arabidopsis thaliana
AT1G52690 2.0kb downstream 2.0kb downstream 3790 true Chr1: 19619745-19623534 Arabidopsis thaliana
AT1G52690 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19621535-19623534 Arabidopsis thaliana
AT1G52690 5.0kb upstream 5.0kb upstream 6790 true Chr1: 19614745-19621534 Arabidopsis thaliana
AT1G52690 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19614745-19619744 Arabidopsis thaliana
AT1G52690 5.0kb downstream 5.0kb downstream 6790 true Chr1: 19619745-19626534 Arabidopsis thaliana
AT1G52690 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19621535-19626534 Arabidopsis thaliana
AT1G52690 10.0kb upstream 10.0kb upstream 11790 true Chr1: 19609745-19621534 Arabidopsis thaliana
AT1G52690 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19609745-19619744 Arabidopsis thaliana
AT1G52690 10.0kb downstream 10.0kb downstream 11790 true Chr1: 19619745-19631534 Arabidopsis thaliana
AT1G52690 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19621535-19631534 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377897 5261 Brassicaceae View MSA
123801668 5264 Brassicales-Malvales View MSA
124350048 5266 SBM View MSA
124250396 5268 Malvidae View MSA
124063227 5270 Rosid View MSA
123749202 5271 Pentapetalae View MSA
122796678 5272 Eudicot View MSA
122050999 5273 Angiosperm View MSA
121350297 5274 Embryophyte View MSA
123428296 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.578        
cufflinks 0.445        
cufflinks 0.022     Low Low
cufflinks 14.574       High
cufflinks 0.099     Low  
cufflinks 2.101        

0 Strain