Gene : AT1G52140 A. thaliana TAIR10
Defline:  (1 of 4) PTHR33265:SF8 - F5F19.20 PROTEIN Genomic Order:  4242
Name:  ? AT1G52140 Secondary Identifier:  ? PAC:19650574
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G52140 0.5kb upstream 0.5kb upstream 1391 true Chr1: 19407364-19408754 Arabidopsis thaliana
AT1G52140 0.5kb upstream 0.5kb upstream 500 false Chr1: 19408255-19408754 Arabidopsis thaliana
AT1G52140 0.5kb downstream 0.5kb downstream 1391 true Chr1: 19406864-19408254 Arabidopsis thaliana
AT1G52140 0.5kb downstream 0.5kb downstream 500 false Chr1: 19406864-19407363 Arabidopsis thaliana
AT1G52140 1.0kb upstream 1.0kb upstream 1891 true Chr1: 19407364-19409254 Arabidopsis thaliana
AT1G52140 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19408255-19409254 Arabidopsis thaliana
AT1G52140 1.0kb downstream 1.0kb downstream 1891 true Chr1: 19406364-19408254 Arabidopsis thaliana
AT1G52140 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19406364-19407363 Arabidopsis thaliana
AT1G52140 2.0kb upstream 2.0kb upstream 2891 true Chr1: 19407364-19410254 Arabidopsis thaliana
AT1G52140 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19408255-19410254 Arabidopsis thaliana
AT1G52140 2.0kb downstream 2.0kb downstream 2891 true Chr1: 19405364-19408254 Arabidopsis thaliana
AT1G52140 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19405364-19407363 Arabidopsis thaliana
AT1G52140 5.0kb upstream 5.0kb upstream 5891 true Chr1: 19407364-19413254 Arabidopsis thaliana
AT1G52140 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19408255-19413254 Arabidopsis thaliana
AT1G52140 5.0kb downstream 5.0kb downstream 5891 true Chr1: 19402364-19408254 Arabidopsis thaliana
AT1G52140 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19402364-19407363 Arabidopsis thaliana
AT1G52140 10.0kb upstream 10.0kb upstream 10891 true Chr1: 19407364-19418254 Arabidopsis thaliana
AT1G52140 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19408255-19418254 Arabidopsis thaliana
AT1G52140 10.0kb downstream 10.0kb downstream 10891 true Chr1: 19397364-19408254 Arabidopsis thaliana
AT1G52140 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19397364-19407363 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122362328 5261 Brassicaceae View MSA
123840936 5264 Brassicales-Malvales View MSA
124348654 5266 SBM View MSA
124246073 5268 Malvidae View MSA
124070746 5270 Rosid View MSA
123749628 5271 Pentapetalae View MSA
122795982 5272 Eudicot View MSA
122049050 5273 Angiosperm View MSA
121311224 5274 Embryophyte View MSA
123348548 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.535       Low
cufflinks 24.345        
cufflinks 6.237        
cufflinks 33.821     High High
cufflinks 8.025        
cufflinks 25.565        

0 Strain