Gene : ABO5 A. thaliana TAIR10
Primary Identifier:  ? AT1G51965 Defline:  (1 of 185) PF01535//PF13041 - PPR repeat (PPR) // PPR repeat family (PPR_2)
Genomic Order:  4227 Name:  ? AT1G51965
Secondary Identifier:  ? PAC:19656064
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G51965 0.5kb upstream 0.5kb upstream 2568 true Chr1: 19312078-19314645 Arabidopsis thaliana
AT1G51965 0.5kb upstream 0.5kb upstream 500 false Chr1: 19314146-19314645 Arabidopsis thaliana
AT1G51965 0.5kb downstream 0.5kb downstream 2568 true Chr1: 19311578-19314145 Arabidopsis thaliana
AT1G51965 0.5kb downstream 0.5kb downstream 500 false Chr1: 19311578-19312077 Arabidopsis thaliana
AT1G51965 1.0kb upstream 1.0kb upstream 3068 true Chr1: 19312078-19315145 Arabidopsis thaliana
AT1G51965 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19314146-19315145 Arabidopsis thaliana
AT1G51965 1.0kb downstream 1.0kb downstream 3068 true Chr1: 19311078-19314145 Arabidopsis thaliana
AT1G51965 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19311078-19312077 Arabidopsis thaliana
AT1G51965 2.0kb upstream 2.0kb upstream 4068 true Chr1: 19312078-19316145 Arabidopsis thaliana
AT1G51965 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19314146-19316145 Arabidopsis thaliana
AT1G51965 2.0kb downstream 2.0kb downstream 4068 true Chr1: 19310078-19314145 Arabidopsis thaliana
AT1G51965 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19310078-19312077 Arabidopsis thaliana
AT1G51965 5.0kb upstream 5.0kb upstream 7068 true Chr1: 19312078-19319145 Arabidopsis thaliana
AT1G51965 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19314146-19319145 Arabidopsis thaliana
AT1G51965 5.0kb downstream 5.0kb downstream 7068 true Chr1: 19307078-19314145 Arabidopsis thaliana
AT1G51965 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19307078-19312077 Arabidopsis thaliana
AT1G51965 10.0kb upstream 10.0kb upstream 12068 true Chr1: 19312078-19324145 Arabidopsis thaliana
AT1G51965 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19314146-19324145 Arabidopsis thaliana
AT1G51965 10.0kb downstream 10.0kb downstream 12068 true Chr1: 19302078-19314145 Arabidopsis thaliana
AT1G51965 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19302078-19312077 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122361660 5261 Brassicaceae View MSA
123831117 5264 Brassicales-Malvales View MSA
124341027 5266 SBM View MSA
124242407 5268 Malvidae View MSA
124060540 5270 Rosid View MSA
123739783 5271 Pentapetalae View MSA
122791645 5272 Eudicot View MSA
122041926 5273 Angiosperm View MSA
123429046 5275 Viridiplantae View MSA
121351195 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.116        
cufflinks 8.225        
cufflinks 5.33        
cufflinks 8.714       High
cufflinks 5.277        
cufflinks 7.1        

0 Strain