Gene : 4CL1 A. thaliana TAIR10
Primary Identifier:  ? AT1G51680 Defline:  (1 of 4) 6.2.1.12//6.2.1.34 - 4-coumarate--CoA ligase / 4-coumaryl-CoA synthetase // Trans-feruloyl-CoA synthase / Trans-feruloyl-CoA synthetase
Genomic Order:  4194 Name:  ? AT1G51680
Secondary Identifier:  ? PAC:19655468
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Ontology Annotation Displayer

5 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana PWY-1121 Arabidopsis thaliana pathologic  
Athaliana PWY1F-FLAVSYN Arabidopsis thaliana pathologic  
Athaliana PWY-361 Arabidopsis thaliana pathologic  
Athaliana PWY-6435 Arabidopsis thaliana pathologic  
Athaliana PWY-6673 Arabidopsis thaliana pathologic  

Genomics

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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G51680 0.5kb upstream 0.5kb upstream 3301 true Chr1: 19158752-19162052 Arabidopsis thaliana
AT1G51680 0.5kb upstream 0.5kb upstream 500 false Chr1: 19161553-19162052 Arabidopsis thaliana
AT1G51680 0.5kb downstream 0.5kb downstream 3301 true Chr1: 19158252-19161552 Arabidopsis thaliana
AT1G51680 0.5kb downstream 0.5kb downstream 500 false Chr1: 19158252-19158751 Arabidopsis thaliana
AT1G51680 1.0kb upstream 1.0kb upstream 3801 true Chr1: 19158752-19162552 Arabidopsis thaliana
AT1G51680 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19161553-19162552 Arabidopsis thaliana
AT1G51680 1.0kb downstream 1.0kb downstream 3801 true Chr1: 19157752-19161552 Arabidopsis thaliana
AT1G51680 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19157752-19158751 Arabidopsis thaliana
AT1G51680 2.0kb upstream 2.0kb upstream 4801 true Chr1: 19158752-19163552 Arabidopsis thaliana
AT1G51680 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19161553-19163552 Arabidopsis thaliana
AT1G51680 2.0kb downstream 2.0kb downstream 4801 true Chr1: 19156752-19161552 Arabidopsis thaliana
AT1G51680 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19156752-19158751 Arabidopsis thaliana
AT1G51680 5.0kb upstream 5.0kb upstream 7801 true Chr1: 19158752-19166552 Arabidopsis thaliana
AT1G51680 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19161553-19166552 Arabidopsis thaliana
AT1G51680 5.0kb downstream 5.0kb downstream 7801 true Chr1: 19153752-19161552 Arabidopsis thaliana
AT1G51680 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19153752-19158751 Arabidopsis thaliana
AT1G51680 10.0kb upstream 10.0kb upstream 12801 true Chr1: 19158752-19171552 Arabidopsis thaliana
AT1G51680 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19161553-19171552 Arabidopsis thaliana
AT1G51680 10.0kb downstream 10.0kb downstream 12801 true Chr1: 19148752-19161552 Arabidopsis thaliana
AT1G51680 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19148752-19158751 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122380546 5261 Brassicaceae View MSA
123832271 5264 Brassicales-Malvales View MSA
124344401 5266 SBM View MSA
124253701 5268 Malvidae View MSA
124064969 5270 Rosid View MSA
123741286 5271 Pentapetalae View MSA
122790673 5272 Eudicot View MSA
122048251 5273 Angiosperm View MSA
121345883 5274 Embryophyte View MSA
123380283 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.661        
cufflinks 28.632        
cufflinks 8.254        
cufflinks 47.57     High High
cufflinks 6.952       Low
cufflinks 46.444     High High

0 Strain