Gene : AT1G51580 A. thaliana TAIR10
Defline:  (1 of 2) PTHR10288//PTHR10288:SF174 - KH DOMAIN CONTAINING RNA BINDING PROTEIN // RNA-BINDING KH DOMAIN-CONTAINING PROTEIN Genomic Order:  4184
Name:  ? AT1G51580 Secondary Identifier:  ? PAC:19651150
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G51580 0.5kb upstream 0.5kb upstream 3079 true Chr1: 19125083-19128161 Arabidopsis thaliana
AT1G51580 0.5kb upstream 0.5kb upstream 500 false Chr1: 19125083-19125582 Arabidopsis thaliana
AT1G51580 0.5kb downstream 0.5kb downstream 3079 true Chr1: 19125583-19128661 Arabidopsis thaliana
AT1G51580 0.5kb downstream 0.5kb downstream 500 false Chr1: 19128162-19128661 Arabidopsis thaliana
AT1G51580 1.0kb upstream 1.0kb upstream 3579 true Chr1: 19124583-19128161 Arabidopsis thaliana
AT1G51580 1.0kb upstream 1.0kb upstream 1000 false Chr1: 19124583-19125582 Arabidopsis thaliana
AT1G51580 1.0kb downstream 1.0kb downstream 3579 true Chr1: 19125583-19129161 Arabidopsis thaliana
AT1G51580 1.0kb downstream 1.0kb downstream 1000 false Chr1: 19128162-19129161 Arabidopsis thaliana
AT1G51580 2.0kb upstream 2.0kb upstream 4579 true Chr1: 19123583-19128161 Arabidopsis thaliana
AT1G51580 2.0kb upstream 2.0kb upstream 2000 false Chr1: 19123583-19125582 Arabidopsis thaliana
AT1G51580 2.0kb downstream 2.0kb downstream 4579 true Chr1: 19125583-19130161 Arabidopsis thaliana
AT1G51580 2.0kb downstream 2.0kb downstream 2000 false Chr1: 19128162-19130161 Arabidopsis thaliana
AT1G51580 5.0kb upstream 5.0kb upstream 7579 true Chr1: 19120583-19128161 Arabidopsis thaliana
AT1G51580 5.0kb upstream 5.0kb upstream 5000 false Chr1: 19120583-19125582 Arabidopsis thaliana
AT1G51580 5.0kb downstream 5.0kb downstream 7579 true Chr1: 19125583-19133161 Arabidopsis thaliana
AT1G51580 5.0kb downstream 5.0kb downstream 5000 false Chr1: 19128162-19133161 Arabidopsis thaliana
AT1G51580 10.0kb upstream 10.0kb upstream 12579 true Chr1: 19115583-19128161 Arabidopsis thaliana
AT1G51580 10.0kb upstream 10.0kb upstream 10000 false Chr1: 19115583-19125582 Arabidopsis thaliana
AT1G51580 10.0kb downstream 10.0kb downstream 12579 true Chr1: 19125583-19138161 Arabidopsis thaliana
AT1G51580 10.0kb downstream 10.0kb downstream 10000 false Chr1: 19128162-19138161 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122369691 5261 Brassicaceae View MSA
123835255 5264 Brassicales-Malvales View MSA
124349432 5266 SBM View MSA
124248642 5268 Malvidae View MSA
124071830 5270 Rosid View MSA
123744817 5271 Pentapetalae View MSA
122797103 5272 Eudicot View MSA
122049280 5273 Angiosperm View MSA
121348372 5274 Embryophyte View MSA
123428845 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.603        
cufflinks 6.655       Low
cufflinks 8.205       High
cufflinks 7.276        
cufflinks 6.888        
cufflinks 7.673        

0 Strain