Gene : AT1G50890 A. thaliana TAIR10
Defline:  (1 of 2) PTHR31355//PTHR31355:SF7 - FAMILY NOT NAMED // MICROTUBULE-ASSOCIATED PROTEIN SPIRAL2-LIKE-RELATED Genomic Order:  4110
Name:  ? AT1G50890 Secondary Identifier:  ? PAC:19655637
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50890 0.5kb upstream 0.5kb upstream 4369 true Chr1: 18862171-18866539 Arabidopsis thaliana
AT1G50890 0.5kb upstream 0.5kb upstream 500 false Chr1: 18866040-18866539 Arabidopsis thaliana
AT1G50890 0.5kb downstream 0.5kb downstream 4369 true Chr1: 18861671-18866039 Arabidopsis thaliana
AT1G50890 0.5kb downstream 0.5kb downstream 500 false Chr1: 18861671-18862170 Arabidopsis thaliana
AT1G50890 1.0kb upstream 1.0kb upstream 4869 true Chr1: 18862171-18867039 Arabidopsis thaliana
AT1G50890 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18866040-18867039 Arabidopsis thaliana
AT1G50890 1.0kb downstream 1.0kb downstream 4869 true Chr1: 18861171-18866039 Arabidopsis thaliana
AT1G50890 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18861171-18862170 Arabidopsis thaliana
AT1G50890 2.0kb upstream 2.0kb upstream 5869 true Chr1: 18862171-18868039 Arabidopsis thaliana
AT1G50890 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18866040-18868039 Arabidopsis thaliana
AT1G50890 2.0kb downstream 2.0kb downstream 5869 true Chr1: 18860171-18866039 Arabidopsis thaliana
AT1G50890 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18860171-18862170 Arabidopsis thaliana
AT1G50890 5.0kb upstream 5.0kb upstream 8869 true Chr1: 18862171-18871039 Arabidopsis thaliana
AT1G50890 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18866040-18871039 Arabidopsis thaliana
AT1G50890 5.0kb downstream 5.0kb downstream 8869 true Chr1: 18857171-18866039 Arabidopsis thaliana
AT1G50890 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18857171-18862170 Arabidopsis thaliana
AT1G50890 10.0kb upstream 10.0kb upstream 13869 true Chr1: 18862171-18876039 Arabidopsis thaliana
AT1G50890 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18866040-18876039 Arabidopsis thaliana
AT1G50890 10.0kb downstream 10.0kb downstream 13869 true Chr1: 18852171-18866039 Arabidopsis thaliana
AT1G50890 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18852171-18862170 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365935 5261 Brassicaceae View MSA
123799071 5264 Brassicales-Malvales View MSA
124296629 5266 SBM View MSA
124148727 5268 Malvidae View MSA
123874667 5270 Rosid View MSA
123458603 5271 Pentapetalae View MSA
122795773 5272 Eudicot View MSA
122043238 5273 Angiosperm View MSA
121344620 5274 Embryophyte View MSA
123426800 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.372        
cufflinks 2.388        
cufflinks 1.933       Low
cufflinks 2.917       High
cufflinks 2.04        
cufflinks 2.624        

0 Strain