Gene : SCL5 A. thaliana TAIR10
Primary Identifier:  ? AT1G50600 Defline:  (1 of 3) PTHR31636:SF38 - SCARECROW-LIKE PROTEIN 21-RELATED
Genomic Order:  4081 Name:  ? AT1G50600
Secondary Identifier:  ? PAC:19653360
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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50600 0.5kb upstream 0.5kb upstream 2916 true Chr1: 18737132-18740047 Arabidopsis thaliana
AT1G50600 0.5kb upstream 0.5kb upstream 500 false Chr1: 18739548-18740047 Arabidopsis thaliana
AT1G50600 0.5kb downstream 0.5kb downstream 2916 true Chr1: 18736632-18739547 Arabidopsis thaliana
AT1G50600 0.5kb downstream 0.5kb downstream 500 false Chr1: 18736632-18737131 Arabidopsis thaliana
AT1G50600 1.0kb upstream 1.0kb upstream 3416 true Chr1: 18737132-18740547 Arabidopsis thaliana
AT1G50600 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18739548-18740547 Arabidopsis thaliana
AT1G50600 1.0kb downstream 1.0kb downstream 3416 true Chr1: 18736132-18739547 Arabidopsis thaliana
AT1G50600 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18736132-18737131 Arabidopsis thaliana
AT1G50600 2.0kb upstream 2.0kb upstream 4416 true Chr1: 18737132-18741547 Arabidopsis thaliana
AT1G50600 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18739548-18741547 Arabidopsis thaliana
AT1G50600 2.0kb downstream 2.0kb downstream 4416 true Chr1: 18735132-18739547 Arabidopsis thaliana
AT1G50600 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18735132-18737131 Arabidopsis thaliana
AT1G50600 5.0kb upstream 5.0kb upstream 7416 true Chr1: 18737132-18744547 Arabidopsis thaliana
AT1G50600 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18739548-18744547 Arabidopsis thaliana
AT1G50600 5.0kb downstream 5.0kb downstream 7416 true Chr1: 18732132-18739547 Arabidopsis thaliana
AT1G50600 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18732132-18737131 Arabidopsis thaliana
AT1G50600 10.0kb upstream 10.0kb upstream 12416 true Chr1: 18737132-18749547 Arabidopsis thaliana
AT1G50600 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18739548-18749547 Arabidopsis thaliana
AT1G50600 10.0kb downstream 10.0kb downstream 12416 true Chr1: 18727132-18739547 Arabidopsis thaliana
AT1G50600 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18727132-18737131 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372024 5261 Brassicaceae View MSA
123836526 5264 Brassicales-Malvales View MSA
124338887 5266 SBM View MSA
124244603 5268 Malvidae View MSA
124073750 5270 Rosid View MSA
123752771 5271 Pentapetalae View MSA
122794202 5272 Eudicot View MSA
122051595 5273 Angiosperm View MSA
121350442 5274 Embryophyte View MSA
123381734 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 24.492        
cufflinks 84.511     High High
cufflinks 25.2        
cufflinks 65.208     High  
cufflinks 27.533     High  
cufflinks 71.697     High  

0 Strain