Gene : HIT1 A. thaliana TAIR10
Primary Identifier:  ? AT1G50500 Defline:  (1 of 2) PTHR12820:SF0 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 53 HOMOLOG
Genomic Order:  4072 Name:  ? AT1G50500
Secondary Identifier:  ? PAC:19651526
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Expression

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3 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50500 0.5kb upstream 0.5kb upstream 8491 true Chr1: 18707987-18716477 Arabidopsis thaliana
AT1G50500 0.5kb upstream 0.5kb upstream 500 false Chr1: 18715978-18716477 Arabidopsis thaliana
AT1G50500 0.5kb downstream 0.5kb downstream 8491 true Chr1: 18707487-18715977 Arabidopsis thaliana
AT1G50500 0.5kb downstream 0.5kb downstream 500 false Chr1: 18707487-18707986 Arabidopsis thaliana
AT1G50500 1.0kb upstream 1.0kb upstream 8991 true Chr1: 18707987-18716977 Arabidopsis thaliana
AT1G50500 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18715978-18716977 Arabidopsis thaliana
AT1G50500 1.0kb downstream 1.0kb downstream 8991 true Chr1: 18706987-18715977 Arabidopsis thaliana
AT1G50500 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18706987-18707986 Arabidopsis thaliana
AT1G50500 2.0kb upstream 2.0kb upstream 9991 true Chr1: 18707987-18717977 Arabidopsis thaliana
AT1G50500 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18715978-18717977 Arabidopsis thaliana
AT1G50500 2.0kb downstream 2.0kb downstream 9991 true Chr1: 18705987-18715977 Arabidopsis thaliana
AT1G50500 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18705987-18707986 Arabidopsis thaliana
AT1G50500 5.0kb upstream 5.0kb upstream 12991 true Chr1: 18707987-18720977 Arabidopsis thaliana
AT1G50500 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18715978-18720977 Arabidopsis thaliana
AT1G50500 5.0kb downstream 5.0kb downstream 12991 true Chr1: 18702987-18715977 Arabidopsis thaliana
AT1G50500 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18702987-18707986 Arabidopsis thaliana
AT1G50500 10.0kb upstream 10.0kb upstream 17991 true Chr1: 18707987-18725977 Arabidopsis thaliana
AT1G50500 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18715978-18725977 Arabidopsis thaliana
AT1G50500 10.0kb downstream 10.0kb downstream 17991 true Chr1: 18697987-18715977 Arabidopsis thaliana
AT1G50500 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18697987-18707986 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122377207 5261 Brassicaceae View MSA
123830878 5264 Brassicales-Malvales View MSA
124349969 5266 SBM View MSA
124237123 5268 Malvidae View MSA
124060785 5270 Rosid View MSA
123745504 5271 Pentapetalae View MSA
122792209 5272 Eudicot View MSA
122042616 5273 Angiosperm View MSA
121345322 5274 Embryophyte View MSA
123426739 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.943        
cufflinks 3.455        
cufflinks 2.525       Low
cufflinks 3.617        
cufflinks 2.492       Low
cufflinks 3.951       High

0 Strain