Gene : AT1G50410 A. thaliana TAIR10
Defline:  (1 of 1) PF00176//PF00271//PF13920 - SNF2 family N-terminal domain (SNF2_N) // Helicase conserved C-terminal domain (Helicase_C) // Zinc finger, C3HC4 type (RING finger) (zf-C3HC4_3) Genomic Order:  4063
Name:  ? AT1G50410 Secondary Identifier:  ? PAC:19649464
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50410 0.5kb upstream 0.5kb upstream 5894 true Chr1: 18671663-18677556 Arabidopsis thaliana
AT1G50410 0.5kb upstream 0.5kb upstream 500 false Chr1: 18671663-18672162 Arabidopsis thaliana
AT1G50410 0.5kb downstream 0.5kb downstream 5894 true Chr1: 18672163-18678056 Arabidopsis thaliana
AT1G50410 0.5kb downstream 0.5kb downstream 500 false Chr1: 18677557-18678056 Arabidopsis thaliana
AT1G50410 1.0kb upstream 1.0kb upstream 6394 true Chr1: 18671163-18677556 Arabidopsis thaliana
AT1G50410 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18671163-18672162 Arabidopsis thaliana
AT1G50410 1.0kb downstream 1.0kb downstream 6394 true Chr1: 18672163-18678556 Arabidopsis thaliana
AT1G50410 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18677557-18678556 Arabidopsis thaliana
AT1G50410 2.0kb upstream 2.0kb upstream 7394 true Chr1: 18670163-18677556 Arabidopsis thaliana
AT1G50410 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18670163-18672162 Arabidopsis thaliana
AT1G50410 2.0kb downstream 2.0kb downstream 7394 true Chr1: 18672163-18679556 Arabidopsis thaliana
AT1G50410 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18677557-18679556 Arabidopsis thaliana
AT1G50410 5.0kb upstream 5.0kb upstream 10394 true Chr1: 18667163-18677556 Arabidopsis thaliana
AT1G50410 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18667163-18672162 Arabidopsis thaliana
AT1G50410 5.0kb downstream 5.0kb downstream 10394 true Chr1: 18672163-18682556 Arabidopsis thaliana
AT1G50410 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18677557-18682556 Arabidopsis thaliana
AT1G50410 10.0kb upstream 10.0kb upstream 15394 true Chr1: 18662163-18677556 Arabidopsis thaliana
AT1G50410 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18662163-18672162 Arabidopsis thaliana
AT1G50410 10.0kb downstream 10.0kb downstream 15394 true Chr1: 18672163-18687556 Arabidopsis thaliana
AT1G50410 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18677557-18687556 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122373009 5261 Brassicaceae View MSA
123829354 5264 Brassicales-Malvales View MSA
124341270 5266 SBM View MSA
124253553 5268 Malvidae View MSA
124061950 5270 Rosid View MSA
123743862 5271 Pentapetalae View MSA
122797067 5272 Eudicot View MSA
122048342 5273 Angiosperm View MSA
121347136 5274 Embryophyte View MSA
123428510 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.144        
cufflinks 11.076       High
cufflinks 6.498       Low
cufflinks 10.863       High
cufflinks 6.545       Low
cufflinks 9.023        

0 Strain