Gene : AT1G50140 A. thaliana TAIR10
Defline:  (1 of 2) PTHR23074//PTHR23074:SF95 - AAA ATPASE // AAA-TYPE ATPASE DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  4039
Name:  ? AT1G50140 Secondary Identifier:  ? PAC:19651710
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50140 0.5kb upstream 0.5kb upstream 9468 true Chr1: 18569735-18579202 Arabidopsis thaliana
AT1G50140 0.5kb upstream 0.5kb upstream 500 false Chr1: 18578703-18579202 Arabidopsis thaliana
AT1G50140 0.5kb downstream 0.5kb downstream 9468 true Chr1: 18569235-18578702 Arabidopsis thaliana
AT1G50140 0.5kb downstream 0.5kb downstream 500 false Chr1: 18569235-18569734 Arabidopsis thaliana
AT1G50140 1.0kb upstream 1.0kb upstream 9968 true Chr1: 18569735-18579702 Arabidopsis thaliana
AT1G50140 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18578703-18579702 Arabidopsis thaliana
AT1G50140 1.0kb downstream 1.0kb downstream 9968 true Chr1: 18568735-18578702 Arabidopsis thaliana
AT1G50140 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18568735-18569734 Arabidopsis thaliana
AT1G50140 2.0kb upstream 2.0kb upstream 10968 true Chr1: 18569735-18580702 Arabidopsis thaliana
AT1G50140 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18578703-18580702 Arabidopsis thaliana
AT1G50140 2.0kb downstream 2.0kb downstream 10968 true Chr1: 18567735-18578702 Arabidopsis thaliana
AT1G50140 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18567735-18569734 Arabidopsis thaliana
AT1G50140 5.0kb upstream 5.0kb upstream 13968 true Chr1: 18569735-18583702 Arabidopsis thaliana
AT1G50140 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18578703-18583702 Arabidopsis thaliana
AT1G50140 5.0kb downstream 5.0kb downstream 13968 true Chr1: 18564735-18578702 Arabidopsis thaliana
AT1G50140 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18564735-18569734 Arabidopsis thaliana
AT1G50140 10.0kb upstream 10.0kb upstream 18968 true Chr1: 18569735-18588702 Arabidopsis thaliana
AT1G50140 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18578703-18588702 Arabidopsis thaliana
AT1G50140 10.0kb downstream 10.0kb downstream 18968 true Chr1: 18559735-18578702 Arabidopsis thaliana
AT1G50140 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18559735-18569734 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122368511 5261 Brassicaceae View MSA
123836103 5264 Brassicales-Malvales View MSA
124322132 5266 SBM View MSA
124249795 5268 Malvidae View MSA
124068786 5270 Rosid View MSA
123736578 5271 Pentapetalae View MSA
122786690 5272 Eudicot View MSA
122044741 5273 Angiosperm View MSA
121348057 5274 Embryophyte View MSA
123380716 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.535        
cufflinks 2.648        
cufflinks 2.23       Low
cufflinks 2.866       High
cufflinks 2.364        
cufflinks 2.737        

0 Strain