Gene : AT1G50180 A. thaliana TAIR10
Defline:  (1 of 1) PTHR23155//PTHR23155:SF634 - LEUCINE-RICH REPEAT-CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  4042
Name:  ? AT1G50180 Secondary Identifier:  ? PAC:19657159
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50180 0.5kb upstream 0.5kb upstream 3402 true Chr1: 18583735-18587136 Arabidopsis thaliana
AT1G50180 0.5kb upstream 0.5kb upstream 500 false Chr1: 18583735-18584234 Arabidopsis thaliana
AT1G50180 0.5kb downstream 0.5kb downstream 3402 true Chr1: 18584235-18587636 Arabidopsis thaliana
AT1G50180 0.5kb downstream 0.5kb downstream 500 false Chr1: 18587137-18587636 Arabidopsis thaliana
AT1G50180 1.0kb upstream 1.0kb upstream 3902 true Chr1: 18583235-18587136 Arabidopsis thaliana
AT1G50180 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18583235-18584234 Arabidopsis thaliana
AT1G50180 1.0kb downstream 1.0kb downstream 3902 true Chr1: 18584235-18588136 Arabidopsis thaliana
AT1G50180 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18587137-18588136 Arabidopsis thaliana
AT1G50180 2.0kb upstream 2.0kb upstream 4902 true Chr1: 18582235-18587136 Arabidopsis thaliana
AT1G50180 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18582235-18584234 Arabidopsis thaliana
AT1G50180 2.0kb downstream 2.0kb downstream 4902 true Chr1: 18584235-18589136 Arabidopsis thaliana
AT1G50180 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18587137-18589136 Arabidopsis thaliana
AT1G50180 5.0kb upstream 5.0kb upstream 7902 true Chr1: 18579235-18587136 Arabidopsis thaliana
AT1G50180 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18579235-18584234 Arabidopsis thaliana
AT1G50180 5.0kb downstream 5.0kb downstream 7902 true Chr1: 18584235-18592136 Arabidopsis thaliana
AT1G50180 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18587137-18592136 Arabidopsis thaliana
AT1G50180 10.0kb upstream 10.0kb upstream 12902 true Chr1: 18574235-18587136 Arabidopsis thaliana
AT1G50180 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18574235-18584234 Arabidopsis thaliana
AT1G50180 10.0kb downstream 10.0kb downstream 12902 true Chr1: 18584235-18597136 Arabidopsis thaliana
AT1G50180 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18587137-18597136 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381166 5261 Brassicaceae View MSA
123839056 5264 Brassicales-Malvales View MSA
124350995 5266 SBM View MSA
124253634 5268 Malvidae View MSA
124074947 5270 Rosid View MSA
123753572 5271 Pentapetalae View MSA
122797897 5272 Eudicot View MSA
122051706 5273 Angiosperm View MSA
123429169 5275 Viridiplantae View MSA
121351748 5274 Embryophyte View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.486       High
cufflinks 0.767        
cufflinks 0.703        
cufflinks 0.663        
cufflinks 0.468       Low
cufflinks 0.667        

0 Strain