Gene : ALATS A. thaliana TAIR10
Primary Identifier:  ? AT1G50200 Defline:  (1 of 1) PTHR11777//PTHR11777:SF18 - ALANYL-TRNA SYNTHETASE // ALANINE--TRNA LIGASE, CYTOPLASMIC
Genomic Order:  4044 Name:  ? AT1G50200
Secondary Identifier:  ? PAC:19658099
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Athaliana TRNA-CHARGING-PWY Arabidopsis thaliana pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50200 0.5kb upstream 0.5kb upstream 7788 true Chr1: 18591194-18598981 Arabidopsis thaliana
AT1G50200 0.5kb upstream 0.5kb upstream 500 false Chr1: 18598482-18598981 Arabidopsis thaliana
AT1G50200 0.5kb downstream 0.5kb downstream 7788 true Chr1: 18590694-18598481 Arabidopsis thaliana
AT1G50200 0.5kb downstream 0.5kb downstream 500 false Chr1: 18590694-18591193 Arabidopsis thaliana
AT1G50200 1.0kb upstream 1.0kb upstream 8288 true Chr1: 18591194-18599481 Arabidopsis thaliana
AT1G50200 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18598482-18599481 Arabidopsis thaliana
AT1G50200 1.0kb downstream 1.0kb downstream 8288 true Chr1: 18590194-18598481 Arabidopsis thaliana
AT1G50200 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18590194-18591193 Arabidopsis thaliana
AT1G50200 2.0kb upstream 2.0kb upstream 9288 true Chr1: 18591194-18600481 Arabidopsis thaliana
AT1G50200 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18598482-18600481 Arabidopsis thaliana
AT1G50200 2.0kb downstream 2.0kb downstream 9288 true Chr1: 18589194-18598481 Arabidopsis thaliana
AT1G50200 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18589194-18591193 Arabidopsis thaliana
AT1G50200 5.0kb upstream 5.0kb upstream 12288 true Chr1: 18591194-18603481 Arabidopsis thaliana
AT1G50200 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18598482-18603481 Arabidopsis thaliana
AT1G50200 5.0kb downstream 5.0kb downstream 12288 true Chr1: 18586194-18598481 Arabidopsis thaliana
AT1G50200 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18586194-18591193 Arabidopsis thaliana
AT1G50200 10.0kb upstream 10.0kb upstream 17288 true Chr1: 18591194-18608481 Arabidopsis thaliana
AT1G50200 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18598482-18608481 Arabidopsis thaliana
AT1G50200 10.0kb downstream 10.0kb downstream 17288 true Chr1: 18581194-18598481 Arabidopsis thaliana
AT1G50200 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18581194-18591193 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122364421 5261 Brassicaceae View MSA
123830021 5264 Brassicales-Malvales View MSA
124341952 5266 SBM View MSA
124240298 5268 Malvidae View MSA
124063784 5270 Rosid View MSA
123740226 5271 Pentapetalae View MSA
122791486 5272 Eudicot View MSA
122047019 5273 Angiosperm View MSA
121346985 5274 Embryophyte View MSA
123424131 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 15.484        
cufflinks 14.673        
cufflinks 16.046        
cufflinks 18.474       High
cufflinks 15.711        
cufflinks 14.989        

0 Strain