Gene : AT1G50190 A. thaliana TAIR10
Defline:  (1 of 126) PTHR32410//PTHR32410:SF152 - FAMILY NOT NAMED // C1 DOMAIN-CONTAINING PROTEIN-RELATED Genomic Order:  4043
Name:  ? AT1G50190 Secondary Identifier:  ? PAC:19654839
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G50190 0.5kb upstream 0.5kb upstream 3071 true Chr1: 18588229-18591299 Arabidopsis thaliana
AT1G50190 0.5kb upstream 0.5kb upstream 500 false Chr1: 18590800-18591299 Arabidopsis thaliana
AT1G50190 0.5kb downstream 0.5kb downstream 3071 true Chr1: 18587729-18590799 Arabidopsis thaliana
AT1G50190 0.5kb downstream 0.5kb downstream 500 false Chr1: 18587729-18588228 Arabidopsis thaliana
AT1G50190 1.0kb upstream 1.0kb upstream 3571 true Chr1: 18588229-18591799 Arabidopsis thaliana
AT1G50190 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18590800-18591799 Arabidopsis thaliana
AT1G50190 1.0kb downstream 1.0kb downstream 3571 true Chr1: 18587229-18590799 Arabidopsis thaliana
AT1G50190 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18587229-18588228 Arabidopsis thaliana
AT1G50190 2.0kb upstream 2.0kb upstream 4571 true Chr1: 18588229-18592799 Arabidopsis thaliana
AT1G50190 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18590800-18592799 Arabidopsis thaliana
AT1G50190 2.0kb downstream 2.0kb downstream 4571 true Chr1: 18586229-18590799 Arabidopsis thaliana
AT1G50190 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18586229-18588228 Arabidopsis thaliana
AT1G50190 5.0kb upstream 5.0kb upstream 7571 true Chr1: 18588229-18595799 Arabidopsis thaliana
AT1G50190 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18590800-18595799 Arabidopsis thaliana
AT1G50190 5.0kb downstream 5.0kb downstream 7571 true Chr1: 18583229-18590799 Arabidopsis thaliana
AT1G50190 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18583229-18588228 Arabidopsis thaliana
AT1G50190 10.0kb upstream 10.0kb upstream 12571 true Chr1: 18588229-18600799 Arabidopsis thaliana
AT1G50190 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18590800-18600799 Arabidopsis thaliana
AT1G50190 10.0kb downstream 10.0kb downstream 12571 true Chr1: 18578229-18590799 Arabidopsis thaliana
AT1G50190 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18578229-18588228 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122381688 5261 Brassicaceae View MSA
123803377 5264 Brassicales-Malvales View MSA
124300491 5266 SBM View MSA
124151667 5268 Malvidae View MSA
124070692 5270 Rosid View MSA
123751823 5271 Pentapetalae View MSA
122797568 5272 Eudicot View MSA
122051127 5273 Angiosperm View MSA
121351229 5274 Embryophyte View MSA
123382066 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.023     Low  
cufflinks 0.059     Low  
cufflinks 0.05     Low  
cufflinks 0.037     Low  
cufflinks 0.004     Low Low
cufflinks 0.025     Low  

0 Strain