Gene : AT1G49975 A. thaliana TAIR10
Defline:  (1 of 2) PF05479 - Photosystem I reaction centre subunit N (PSAN or PSI-N) (PsaN) Genomic Order:  4025
Name:  ? AT1G49975 Secondary Identifier:  ? PAC:19649826
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Expression

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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49975 0.5kb upstream 0.5kb upstream 1296 true Chr1: 18504302-18505597 Arabidopsis thaliana
AT1G49975 0.5kb upstream 0.5kb upstream 500 false Chr1: 18504302-18504801 Arabidopsis thaliana
AT1G49975 0.5kb downstream 0.5kb downstream 1296 true Chr1: 18504802-18506097 Arabidopsis thaliana
AT1G49975 0.5kb downstream 0.5kb downstream 500 false Chr1: 18505598-18506097 Arabidopsis thaliana
AT1G49975 1.0kb upstream 1.0kb upstream 1796 true Chr1: 18503802-18505597 Arabidopsis thaliana
AT1G49975 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18503802-18504801 Arabidopsis thaliana
AT1G49975 1.0kb downstream 1.0kb downstream 1796 true Chr1: 18504802-18506597 Arabidopsis thaliana
AT1G49975 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18505598-18506597 Arabidopsis thaliana
AT1G49975 2.0kb upstream 2.0kb upstream 2796 true Chr1: 18502802-18505597 Arabidopsis thaliana
AT1G49975 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18502802-18504801 Arabidopsis thaliana
AT1G49975 2.0kb downstream 2.0kb downstream 2796 true Chr1: 18504802-18507597 Arabidopsis thaliana
AT1G49975 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18505598-18507597 Arabidopsis thaliana
AT1G49975 5.0kb upstream 5.0kb upstream 5796 true Chr1: 18499802-18505597 Arabidopsis thaliana
AT1G49975 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18499802-18504801 Arabidopsis thaliana
AT1G49975 5.0kb downstream 5.0kb downstream 5796 true Chr1: 18504802-18510597 Arabidopsis thaliana
AT1G49975 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18505598-18510597 Arabidopsis thaliana
AT1G49975 10.0kb upstream 10.0kb upstream 10796 true Chr1: 18494802-18505597 Arabidopsis thaliana
AT1G49975 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18494802-18504801 Arabidopsis thaliana
AT1G49975 10.0kb downstream 10.0kb downstream 10796 true Chr1: 18504802-18515597 Arabidopsis thaliana
AT1G49975 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18505598-18515597 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122365956 5261 Brassicaceae View MSA
123828421 5264 Brassicales-Malvales View MSA
124345551 5266 SBM View MSA
124239593 5268 Malvidae View MSA
124067734 5270 Rosid View MSA
123736810 5271 Pentapetalae View MSA
122791162 5272 Eudicot View MSA
122050730 5273 Angiosperm View MSA
121348092 5274 Embryophyte View MSA
123425572 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 40.707     High  
cufflinks 0.113     Low  
cufflinks 51.863     High  
cufflinks 0.308     Low  
cufflinks 37.233     High  
cufflinks 0.06     Low Low

0 Strain