Gene : AT1G49980 A. thaliana TAIR10
Defline:  (1 of 1) K03511 - DNA polymerase kappa (POLK) Genomic Order:  4026
Name:  ? AT1G49980 Secondary Identifier:  ? PAC:19658210
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0 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G49980 0.5kb upstream 0.5kb upstream 5702 true Chr1: 18507471-18513172 Arabidopsis thaliana
AT1G49980 0.5kb upstream 0.5kb upstream 500 false Chr1: 18507471-18507970 Arabidopsis thaliana
AT1G49980 0.5kb downstream 0.5kb downstream 5702 true Chr1: 18507971-18513672 Arabidopsis thaliana
AT1G49980 0.5kb downstream 0.5kb downstream 500 false Chr1: 18513173-18513672 Arabidopsis thaliana
AT1G49980 1.0kb upstream 1.0kb upstream 6202 true Chr1: 18506971-18513172 Arabidopsis thaliana
AT1G49980 1.0kb upstream 1.0kb upstream 1000 false Chr1: 18506971-18507970 Arabidopsis thaliana
AT1G49980 1.0kb downstream 1.0kb downstream 6202 true Chr1: 18507971-18514172 Arabidopsis thaliana
AT1G49980 1.0kb downstream 1.0kb downstream 1000 false Chr1: 18513173-18514172 Arabidopsis thaliana
AT1G49980 2.0kb upstream 2.0kb upstream 7202 true Chr1: 18505971-18513172 Arabidopsis thaliana
AT1G49980 2.0kb upstream 2.0kb upstream 2000 false Chr1: 18505971-18507970 Arabidopsis thaliana
AT1G49980 2.0kb downstream 2.0kb downstream 7202 true Chr1: 18507971-18515172 Arabidopsis thaliana
AT1G49980 2.0kb downstream 2.0kb downstream 2000 false Chr1: 18513173-18515172 Arabidopsis thaliana
AT1G49980 5.0kb upstream 5.0kb upstream 10202 true Chr1: 18502971-18513172 Arabidopsis thaliana
AT1G49980 5.0kb upstream 5.0kb upstream 5000 false Chr1: 18502971-18507970 Arabidopsis thaliana
AT1G49980 5.0kb downstream 5.0kb downstream 10202 true Chr1: 18507971-18518172 Arabidopsis thaliana
AT1G49980 5.0kb downstream 5.0kb downstream 5000 false Chr1: 18513173-18518172 Arabidopsis thaliana
AT1G49980 10.0kb upstream 10.0kb upstream 15202 true Chr1: 18497971-18513172 Arabidopsis thaliana
AT1G49980 10.0kb upstream 10.0kb upstream 10000 false Chr1: 18497971-18507970 Arabidopsis thaliana
AT1G49980 10.0kb downstream 10.0kb downstream 15202 true Chr1: 18507971-18523172 Arabidopsis thaliana
AT1G49980 10.0kb downstream 10.0kb downstream 10000 false Chr1: 18513173-18523172 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372893 5261 Brassicaceae View MSA
123831351 5264 Brassicales-Malvales View MSA
124339178 5266 SBM View MSA
124241594 5268 Malvidae View MSA
124064491 5270 Rosid View MSA
123752653 5271 Pentapetalae View MSA
122794532 5272 Eudicot View MSA
122043377 5273 Angiosperm View MSA
121348384 5274 Embryophyte View MSA
123428686 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.26        
cufflinks 4.862       High
cufflinks 3.878        
cufflinks 4.885       High
cufflinks 3.136       Low
cufflinks 3.625        

0 Strain