Gene : PG1 A. thaliana TAIR10
Primary Identifier:  ? AT1G60390 Defline:  (1 of 3) PTHR31458//PTHR31458:SF3 - FAMILY NOT NAMED // POLYGALACTURONASE NON-CATALYTIC SUBUNIT JP630-RELATED
Genomic Order:  4933 Name:  ? AT1G60390
Secondary Identifier:  ? PAC:19657259
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
AT1G60390 0.5kb upstream 0.5kb upstream 2663 true Chr1: 22247474-22250136 Arabidopsis thaliana
AT1G60390 0.5kb upstream 0.5kb upstream 500 false Chr1: 22249637-22250136 Arabidopsis thaliana
AT1G60390 0.5kb downstream 0.5kb downstream 2663 true Chr1: 22246974-22249636 Arabidopsis thaliana
AT1G60390 0.5kb downstream 0.5kb downstream 500 false Chr1: 22246974-22247473 Arabidopsis thaliana
AT1G60390 1.0kb upstream 1.0kb upstream 3163 true Chr1: 22247474-22250636 Arabidopsis thaliana
AT1G60390 1.0kb upstream 1.0kb upstream 1000 false Chr1: 22249637-22250636 Arabidopsis thaliana
AT1G60390 1.0kb downstream 1.0kb downstream 3163 true Chr1: 22246474-22249636 Arabidopsis thaliana
AT1G60390 1.0kb downstream 1.0kb downstream 1000 false Chr1: 22246474-22247473 Arabidopsis thaliana
AT1G60390 2.0kb upstream 2.0kb upstream 4163 true Chr1: 22247474-22251636 Arabidopsis thaliana
AT1G60390 2.0kb upstream 2.0kb upstream 2000 false Chr1: 22249637-22251636 Arabidopsis thaliana
AT1G60390 2.0kb downstream 2.0kb downstream 4163 true Chr1: 22245474-22249636 Arabidopsis thaliana
AT1G60390 2.0kb downstream 2.0kb downstream 2000 false Chr1: 22245474-22247473 Arabidopsis thaliana
AT1G60390 5.0kb upstream 5.0kb upstream 7163 true Chr1: 22247474-22254636 Arabidopsis thaliana
AT1G60390 5.0kb upstream 5.0kb upstream 5000 false Chr1: 22249637-22254636 Arabidopsis thaliana
AT1G60390 5.0kb downstream 5.0kb downstream 7163 true Chr1: 22242474-22249636 Arabidopsis thaliana
AT1G60390 5.0kb downstream 5.0kb downstream 5000 false Chr1: 22242474-22247473 Arabidopsis thaliana
AT1G60390 10.0kb upstream 10.0kb upstream 12163 true Chr1: 22247474-22259636 Arabidopsis thaliana
AT1G60390 10.0kb upstream 10.0kb upstream 10000 false Chr1: 22249637-22259636 Arabidopsis thaliana
AT1G60390 10.0kb downstream 10.0kb downstream 12163 true Chr1: 22237474-22249636 Arabidopsis thaliana
AT1G60390 10.0kb downstream 10.0kb downstream 10000 false Chr1: 22237474-22247473 Arabidopsis thaliana

10 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122372157 5261 Brassicaceae View MSA
123840540 5264 Brassicales-Malvales View MSA
124322738 5266 SBM View MSA
124169209 5268 Malvidae View MSA
124060515 5270 Rosid View MSA
123747690 5271 Pentapetalae View MSA
122795038 5272 Eudicot View MSA
122050223 5273 Angiosperm View MSA
121351029 5274 Embryophyte View MSA
123381981 5275 Viridiplantae View MSA

6 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.613        
cufflinks 32.868     High  
cufflinks 0.857        
cufflinks 27.452        
cufflinks 0.737       Low
cufflinks 33.589     High  

0 Strain